BiRD bioinformatics Hub

Publications

⚠️ If you use GLiCID resources, don’t forget to to include this wording in your publications. ⚠️

This research used resources of the GLiCID Computing Facility (Ligerien Group for Intensive Distributed Computing, www.glicid.fr, Pays de la Loire, France. We are grateful to the Institut Français de Bioinformatique and the BiRD core facility, member of Biogenouest, financed under the Programme d’Investissements d’Avenir funded by the Agence Nationale de la Recherche (RENABI-IFB ANR-11-INBS-0013 and MUDIS4LS ANR-21-ESRE-0048), for providing help and/or computing and/or storage resources.

2025

Authored

  1. Lamarre, P., Andersen, J., Gaignard, A., & Cazalens, S. (2025). A Deep Dive into FAIRness Assessment: UReFM, a Formal Framework for Representing, Analyzing and Comparing Measures. In Transactions on Large-Scale Data- and Knowledge-Centered Systems LVIII (pp. 93–127). Springer Berlin Heidelberg. https://doi.org/10.1007/978-3-662-72116-2_4 [read]
  2. Rioualen, C., Doyle, M., Gaignard, A., Carey, V., & Ménager, H. (2025). Interoperability of Bioconductor packages within the ELIXIR Research Software Ecosystem using the EDAM ontology. Zenodo. https://doi.org/10.5281/zenodo.17086358 [read]
  3. Paré, L., Bordron, P., David, L., Mahé, M., Bihouée, A., & Eveillard, D. (2025). HUMESS: integrating quantitative transcriptomic analysis and metabolic modeling to unveil condition-specific gene signatures. Bioinformatics, 41(8). https://doi.org/10.1093/bioinformatics/btaf448 [read]
  4. Quemeneur, B., Bihouée, A., Chaffron, S., Médigue, C., Ménager, H., & Gaignard, A. (2025). A multi-modal and temporal antibiotic resistance knowledge graph. JOBIM 2025. https://hal.science/hal-05126299 [read]
  5. Rioualen, C., Doyle, M., Gaignard, A., Carey, V. J., & Ménager, H. (2025). Annotating Bioconductor packages using the EDAM ontology. Journées Ouvertes en Biologie Informatique et Mathématiques JOBIM 2025. https://cnrs.hal.science/hal-05142802 [read]
  6. Le Clanche, U., Cohen-Boulakia, S., Cunff, Y. L., Dameron, O., & Gaignard, A. (2025). Assessing bioinformatics software annotations: bio.tools case-study. Proceedings JOBIM, 1–7. https://inria.hal.science/hal-05096849 [read]
  7. Dang, M.-H., Thi Pham, T. H., Molli, P., Skaf-Molli, H., & Gaignard, A. (2025). LLM4Schema.org: Generating Schema.org Markups with Large Language Models. Semantic Web – Interoperability, Usability, Applicability. https://hal.science/hal-05138664 [read]
  8. Rioualen, C., Doyle, M., Gaignard, A., Carey, V. J., & Ménager, H. (2025). Integrating Bioconductor packages with the ELIXIR research software ecosystem using EDAM. F1000 Research Limited. https://doi.org/10.7490/f1000research.1120184.1 [read]
  9. Jhee, J. H., Megina, A., Constant Dit Beaufils, P., Karakachoff, M., Redon, R., Gaignard, A., & Coulet, A. (2025). Predicting clinical outcomes from patient care pathways represented with temporal knowledge graphs. In E. Curry, M. Acosta, M. Poveda-Villalón, M. van Erp, K. H. Adegboyega Ojo, C. Shimizu, & P. Lisena (Eds.), Lecture Notes in Computer Science: Vol. LNCS-15718 (pp. 282–300). Springer Nature Switzerland. https://doi.org/10.1007/978-3-031-94575-5_16 [read]
  10. Molli, P., Skaf-Molli, H., Ferré, S., Gaignard, A., & Cellier, P. (2025). SparqLLM : Retrieval-Augmented SPARQL Query Processing. ESWC 2025 - 22nd European Semantic Web Conference, 1–5. https://hal.science/hal-05138658 [read]
  11. Quemeneur, B., Bihouée, A., Chaffron, S., Médigue, C., Ménager, H., & Gaignard, A. (2025, February). A multi-modal and temporal antibiotic resistance knowledge graph. SWAT4HCLS 2025 - 16th International SWAT4HCLS Conference : Semantic Web Applications and Tools for Health Care and Life Sciences. https://hal.science/hal-04976716 [read]
  12. Bodrug-Schepers, A., Chabane, H., Montoya, G., Redon, R., Gaignard, A., & Serrano-Alvarado, P. (2025, February). Semantic Beacons: a framework to support federated querying over genomic variants and public Knowledge Graphs. SWAT4HCLS 2025. https://hal.science/hal-04908530 [read]

Acknowledged

  1. Wu, Y., Zhao, X., Chen, J. X., Chaumier, T., & Tirichine, L. (2025). The RING1 subunit of Polycomb Repressive Complex 1 monoubiquitinates histone H2A and mediates repression independently of Polycomb Repressive Complex 2 in the model diatom Phaeodactylum tricornutum. New Phytologist. https://doi.org/10.1111/nph.70802 [read]
  2. Levy, M., Janin, A., Marmontel, O., Fourier, A., Nony, S., Rimbert, A., Cariou, B., Villar-Fimbel, S., Charrière, S., Moulin, P., & Di Filippo, M. (2025). Synergic combination of the monogenic ANGPTL3 p.H343R variant and a polygenic predisposition in a family with hypobetalipoproteinemia. Atherosclerosis, 411, 120569. https://doi.org/10.1016/j.atherosclerosis.2025.120569 [read]
  3. Rousseau, C., Tanguy, G., Legeay, E., Blanquart, S., Belcour, A., Rousvoal, S., Potin, P., Leblanc, C., & Dittami, S. M. (2025). A duo of fungi and complex and dynamic bacterial community networks contribute to shape the Ascophyllum nodosum holobiont. Environmental Microbiome, 21(1). https://doi.org/10.1186/s40793-025-00825-z [read]
  4. Zhang, B., Loaiza, N., Rimbert, A., Oldoni, F., Blauw, L. L., Rensen, P. C. N., Martinez, L. O., Robert, J., von Eckardstein, A., Wolters, J. C., Huijkman, N., Kloosterhuis, N., Smit, M., van de Sluis, B., Kuivenhoven, J. A., & Tharehalli, U. (2025). Loss of GPR146 decreases plasma levels of HDL cholesterol via post-translational up-regulation of SR-B1 protein levels. Cardiovascular Research. https://doi.org/10.1093/cvr/cvaf254 [read]
  5. Chandola, U., Manirakiza, E., Maillard, M., Lavier Aydat, L. J., Camuel, A., Trottier, C., Tanaka, A., Chaumier, T., Giraud, E., & Tirichine, L. (2025). A Bradyrhizobium isolate from a marine diatom induces nitrogen-fixing nodules in a terrestrial legume. Nature Microbiology. https://doi.org/10.1038/s41564-025-02105-5 [read]
  6. Chauveau, C., Nerriere-Daguin, V., Fourny, M., Fourgeux, C., Larcher, T., Delbos, L., Braud, M., Brusselle, L., Rousseau, O., Poschmann, J., Verdier, J., Haspot, F., Blancho, G., & Ville, S. (2025). MEK inhibition prevents human skin graft rejection by promoting CD8+TCF1+ over CD8 effector T cells. IScience, 28(9), 113310. https://doi.org/10.1016/j.isci.2025.113310 [read]
  7. Le Corvec, T., Burgaud, M., Steenman, M., Tesfaye, R. A., Gouëffic, Y., Maurel, B., & Quillard, T. (2025). Identification of miR136, miR155, and miR183 in Vascular Calcification in Human Peripheral Arteries. International Journal of Molecular Sciences, 26(19), 9349. https://doi.org/10.3390/ijms26199349 [read]
  8. Ishikawa, T., Kimoto, H., Seki, A., Shirai, M., Uto, K., Makiyama, T., Kitai, T., Mishima, H., Trujillano, D., Simonet, F., Baron, E., Lindenbaum, P., Kyndt, F., Goudal, A., Fukushima, N., Fujita, T., Hatakeyama, K., Hagiwara, N., Yoshiura, K.-ichiro, … Makita, N. (2025). Phenotypic spectrum of cardiac conduction disturbance and cardiomyopathy linked to titin canonical splice-site variants. Cardiovascular Research. https://doi.org/10.1093/cvr/cvaf135 [read]
  9. Cardaillac, C., Trottier, C., Brochard, C., Aubert, P., Bordron, P., Perrouin-Verbe, M.-A., Thubert, T., Chaffron, S., Levesque, A., Ploteau, S., Marchix, J., & Neunlist, M. (2025). Gut, vaginal, and urinary microbiota as potential biomarkers of sensitization in women with chronic pelvic pain. American Journal of Obstetrics and Gynecology, 233(2), 103.e1–103.e18. https://doi.org/10.1016/j.ajog.2025.01.013 [read]
  10. Lefebvre, C. C., Giowachini, P., Derrien, J., Naour, M., Corre, I., Thirouard, L., Douillard, E., Chiron, D., Guillonneau, F., Treps, L., Campone, M., Juin, P. P., & Souazé, F. (2025). MCL-1 as a molecular switch between myofibroblastic and pro-angiogenic features of breast cancer-associated fibroblasts. Cell Death &Amp; Disease, 16(1). https://doi.org/10.1038/s41419-025-07920-6 [read]
  11. Gabillard-Lefort, C., Martinez, C. S., Gueguen, N., Desquiret-Dumas, V., Wery, M., Legoff, L., Guimier, A., Rondeau, S., Barcia, G., Barnerias, C., Cogne, B., Besnard, T., Lorino, E., Douglas, J., Bodamer, O., Vetro, A., Guerrini, R., Balestrini, S., Conti, V., … Baris, O. R. (2025). Bi-allelic variants in TM2D3 cause a severe syndromic neurodevelopmental disorder associated with endoplasmic reticulum and mitochondrial abnormalities. The American Journal of Human Genetics, 112(7), 1711–1721. https://doi.org/10.1016/j.ajhg.2025.05.004 [read]
  12. Vancamp, P., Grit, I., Demonceaux, M., Ferchaud-Roucher, V., Parnet, P., & Amarger, V. (2025). Reduced Availability of Essential Amino Acids Disrupts Differentiation of Anorexigenic POMC Neurons in the Fetal Rat Hypothalamus. Molecular Neurobiology. https://doi.org/10.1007/s12035-025-05201-z [read]
  13. Ducloyer, M., Baruteau, A.-E., Franco, P., Guyon, A., Sapin, V., Karakachoff, M., Savall, F., Schott, J.-J., de Pontual, L., De Visme, S., Ferrand, L., Jarry, B., Beudin, D., Scherdel, P., & Lorton, F. (2025). Identification of novel genetic, neurobiological and radio-anatomical biomarkers for risk stratification of sudden unexpected death in infancy and early childhood: the BIOMINRISK study protocol. BMJ Open, 15(7), e101811. https://doi.org/10.1136/bmjopen-2025-101811 [read]
  14. Régimbeau, A., Aumont, O., Bowler, C., Guidi, L., Jackson, G. A., Karsenti, E., Memery, L., Tagliabue, A., & Eveillard, D. (2025). Unveiling the link between phytoplankton molecular physiology and biogeochemical cycling via genome-scale modeling. Science Advances, 11(23). https://doi.org/10.1126/sciadv.adq3593 [read]
  15. Mlala, S., Picault, S., Sala, C., Villard, P., Vinard, J.-L., & Hénaux, V. (2025). Assessing the efficiency of the bovine brucellosis surveillance-control system in a disease-free context through agent-based modelling. Veterinary Research, 56(1). https://doi.org/10.1186/s13567-025-01549-1 [read]
  16. Bhattacharya, N., Rockstroh, A., Deshpande, S. S., Thomas, S. K., Yadav, A., Goswami, C., Chawla, S., Solomon, P., Fourgeux, C., Ahuja, G., Hollier, B., Kumar, H., Roquilly, A., Poschmann, J., Lehman, M., Nelson, C. C., & Sengupta, D. (2025). Artificial intelligence driven tumor risk stratification from single-cell transcriptomics using phenotype algebra. ELife, 13. https://doi.org/10.7554/elife.98469 [read]
  17. Rousseau, C., Henry, N., Rousvoal, S., Tanguy, G., Legeay, E., Leblanc, C., & Dittami, S. M. (2025). A Practical Comparison of Short‐ and Long‐Read Metabarcoding Sequencing: Challenges and Solutions for Plastid Read Removal and Microbial Community Exploration of Seaweed Samples. Molecular Ecology Resources, 25(7). https://doi.org/10.1111/1755-0998.14129 [read]
  18. Bolteau, M., Messaoudi, C., David, L., Bourdon, J., & Guziolowski, C. (2025). Deep exploration of logical models of cell differentiation in human preimplantation embryos. Npj Systems Biology and Applications, 11(1). https://doi.org/10.1038/s41540-025-00537-7 [read]
  19. Chandola, U., Gaudin, M., Trottier, C., Lavier-Aydat, L.-J., Manirakiza, E., Menicot, S., Fischer, E. J., Louvet, I., Lacour, T., Chaumier, T., Tanaka, A., Pohnert, G., Chaffron, S., & Tirichine, L. (2025). Non-cyanobacterial diazotrophs support the survival of marine microalgae in nitrogen-depleted environment. Genome Biology, 26(1). https://doi.org/10.1186/s13059-025-03597-4 [read]
  20. Martin, L., Maric, D., Idriss, S., Delamare, M., Le Roy, A., Maaziz, N., Caillaud, A., Si-Tayeb, K., Robriquet, F., Lenglet, M., Erceau, L., Bellanné-Chantelot, C., Plo, I., Aral, B., Garrec, C., Airaud, F., Gianfermi, C., Antunes, V., Keppner, A., … Gardie, B. (2025). Identification of Hepatic-like EPO as a Cause of Polycythemia. New England Journal of Medicine, 392(17), 1684–1697. https://doi.org/10.1056/nejmoa2414954 [read]
  21. Cordier, C., Jézéquel, P., Campone, M., Panloup, F., & Basseville, A. (2025). HABiC: an algorithm based on the exact computation of the Kantorovich-Rubinstein optimizer for binary classification in transcriptomics. Bioinformatics, 41(6). https://doi.org/10.1093/bioinformatics/btaf310 [read]
  22. Solomon, P., Kaurani, L., Budde, M., Guiné, J.-B., Krüger, D. M., Riquin, K., Pena, T., Burkhardt, S., Fourgeux, C., Adorjan, K., Heilbronner, M., Kalman, J. L., Kohshour, M. O., Papiol, S., Reich-Erkelenz, D., Schaupp, S. K., Schulte, E. C., Senner, F., Vogl, T., … Poschmann, J. (2025). Integrative analysis of miRNA expression profiles reveals distinct and common molecular mechanisms underlying broad diagnostic groups of severe mental disorders. Molecular Psychiatry, 30(9), 4364–4383. https://doi.org/10.1038/s41380-025-03018-9 [read]
  23. Bhattacharya, N., Rockstroh, A., Deshpande, S. S., Thomas, S. K., Yadav, A., Goswami, C., Chawla, S., Solomon, P., Fourgeux, C., Ahuja, G., Hollier, B., Kumar, H., Roquilly, A., Poschmann, J., Lehman, M., Nelson, C. C., & Sengupta, D. (2025). SCellBOW: AI-Driven Tumor Risk Stratification from Single-Cell Transcriptomics Using Phenotype Algebra. https://doi.org/10.7554/elife.98469.2 [read]
  24. Joalland, N., Quéméner, A., Deshayes, S., Humeau, R., Maillasson, M., LeBihan, H., Salama, A., Fresquet, J., Remy, S., Mortier, E., Blanquart, C., Guillonneau, C., & Anegon, I. (2025). New soluble CSF-1R-dimeric mutein with enhanced trapping of both CSF-1 and IL-34 reduces suppressive tumor-associated macrophages in pleural mesothelioma. Journal for ImmunoTherapy of Cancer, 13(3), e010112. https://doi.org/10.1136/jitc-2024-010112 [read]
  25. Batta, S. P. R., Rio, M., Lebot, C., Baron-Menguy, C., Bodet, M., Moutaoukil, R., Le Ruz, R., Babahnini, I., Loirand, G., & Vion, A.-C. (2025). ARHGEF18 is a flow-responsive exchange factor controlling endothelial tight junctions and vascular leakage. Cell Reports, 44(3), 115288. https://doi.org/10.1016/j.celrep.2025.115288 [read]
  26. Champion, O., Maïga, S., Antier, C., Dousset, C., Moreau-Aubry, A., Bellanger, C., Guillonneau, F., Descamps, G., Moreno, J. A., Kwon, O., Lilli, N. L., Moreau, P., Chiron, D., Pellat-Deceunynck, C., Touzeau, C., & Gomez-Bougie, P. (2025). VDAC2 primes myeloma cells for BAK-dependent apoptosis and represents a novel therapeutic target. Leukemia. https://doi.org/10.1038/s41375-025-02523-8 [read]
  27. Souazé, F., Lefebvre, C., Giowachini, P., Derrien, J., Naour, M., Corre, I., Douillard, E., Guillonneau, F., Campone, M., & Juin, P. (2025). MCL-1 as a molecular switch between myofibroblastic and pro-angiogenic features of breast cancer- associated fibroblasts. https://doi.org/10.21203/rs.3.rs-6007010/v1 [read]
  28. Zhang, B., Rimbert, A., Lainé, A., Huijkman, N., Kloosterhuis, N., Smit, M., van de Sluis, B., Kuivenhoven, J. A., & Tharehalli, U. (2025). A study into rare GPR146 gene variants in humans and mice. Atherosclerosis, 119137. https://doi.org/10.1016/j.atherosclerosis.2025.119137 [read]
  29. Bryan, E., Valsakumar, D., Idigo, N. J., Warburton, M., Webb, K. M., McLaughlin, K. A., Spanos, C., Lenci, S., Major, V., Ambrosi, C., Andrews, S., Baubec, T., Rappsilber, J., & Voigt, P. (2025). Nucleosomal asymmetry shapes histone mark binding and promotes poising at bivalent domains. Molecular Cell, 85(3), 471–489.e12. https://doi.org/10.1016/j.molcel.2024.12.002 [read]
  30. Ramondenc, S., Eveillard, D., Metfies, K., Iversen, M. H., Nöthig, E.-M., Piepenburg, D., Hasemann, C., & Soltwedel, T. (2025). Unveiling pelagic-benthic coupling associated with the biological carbon pump in the Fram Strait (Arctic Ocean). Nature Communications, 16(1). https://doi.org/10.1038/s41467-024-55221-x [read]
  31. Manirakiza, E., Chaumier, T., & Tirichine, L. (2025). Complete genome sequence of a marine Pseudoalteromonas bacterial strain. Microbiology Resource Announcements, 14(1). https://doi.org/10.1128/mra.00975-24 [read]
  32. Cardon, A., Guinebretière, T., Dong, C., Gil, L., Ado, S., Gavlovsky, P.-jean, Braud, M., Danger, R., Schultheiß, C., Doméné, A., Paul-Gilloteaux, P., Chevalier, C., Bernier, L., Judor, J.-P., Fourgeux, C., Imbert, A., Khaldi, M., Bardou-Jacquet, E., Elkrief, L., … Renand, A. (2025). Single cell profiling of circulating autoreactive CD4 T cells from patients with autoimmune liver diseases suggests tissue imprinting. Nature Communications, 16(1). https://doi.org/10.1038/s41467-025-56363-2 [read]

2024

Authored

  1. Lamarre, P., Andersen, J., Gaignard, A., & Cazalens, S. (2024, November). A generic framework to better understand and compare FAIRness measures. Knowledge Engineering and Knowledge Management - 24rd International Conference, EKAW 2024. https://hal.science/hal-04709107 [read]
  2. Rioualen, C., Gaignard, A., Kalaš, M., & Ménager, H. (2024). The EDAM Framework and Control Room. Journées Ouvertes en Biologie Informatique et Mathématiques JOBIM 2024. https://hal.science/hal-04619281 [read]
  3. Bourhy, K., Bouri, L., Bruley, C., Collin, O., Lamotte, F. D., Denecker, T., Devignes, M.-D., Dufayard, J.-F., Gaignard, A., Goué, N., Le Corguille, G., Lieby, P., Ménager, H., Messak, I., Ouahioune, H., Rioualen, C., Rosnet, T., Rousseau, B., Seiler, J., & van Helden, J. (2024). Orchestrating data flows throughout their whole life cycle. JOBIM 2024 - Journées Ouvertes en Biologie, Informatique et Mathématiques. https://hal.science/hal-04618277 [read]
  4. Gaignard, A., Tsueng, G., Mičetić, I., Castro, L. J., & Juty, N. (2024). Improving Bioschemas creation and community adoption through process improvements, tool development, and advancing compliance to FAIR standards. https://doi.org/10.37044/osf.io/8km9j [read]

Acknowledged

  1. Soueidan, A., Idiri, K., Becchina, C., Esparbès, P., Legrand, A., Le Bastard, Q., & Montassier, E. (2024). Pooled analysis of oral microbiome profiles defines robust signatures associated with periodontitis. MSystems, 9(11). https://doi.org/10.1128/msystems.00930-24 [read]
  2. Rousseaux, A., Misme‐Aucouturier, B., Le Romancer, M., Villette, R., Larsen, M., De Carvalho, M., Bouchaud, G., Perrin, E., Barbarot, S., Brosseau, C., & Bodinier, M. (2024). A Gestational Supplementation With 2′‐Fucosyllactose Is an Effective Strategy to Prevent Food Allergy. Allergy, 80(3), 886–889. https://doi.org/10.1111/all.16396 [read]
  3. Durand, R., Bellanger, C., Descamps, G., Dousset, C., Maïga, S., Derrien, J., Thirouard, L., Bouard, L., Asnagli, H., Beer, P., Parker, A., Gomez‐Bougie, P., Devilder, M. C., Moreau, P., Touzeau, C., Moreau‐Aubry, A., Chiron, D., & Pellat‐Deceunynck, C. (2024). Combined inhibition of CTPS1 and ATR is a metabolic vulnerability in p53‐deficient myeloma cells. HemaSphere, 8(10). https://doi.org/10.1002/hem3.70016 [read]
  4. Manirakiza, E., Chaumier, T., & Tirichine, L. (2024). Genomic sequences and annotations of two Pseudomonas species isolated from marine and terrestrial habitats. Microbiology Resource Announcements, 13(10). https://doi.org/10.1128/mra.00373-24 [read]
  5. Manirakiza, E., Chaumier, T., & Tirichine, L. (2024). Genomic sequences and annotations of two Pseudomonas species isolated from marine and terrestrial habitats. Microbiology Resource Announcements, 13(10). https://doi.org/10.1128/mra.00373-24 [read]
  6. Demuth, S., Faddeenkov, I., Paris, J., Rousseau, O., Baciotti, B., Payet, M., Casey, R., Vukusic, S., Doyle, S., Jarre, G., Vince, N., Limou, S., Sèze, J. D., Kerbrat, A., Laplaud, D., Edan, G., & Gourraud, P.-A. (2024). Are we in a Big Data era for multiple sclerosis? Lessons from integrating clinical trials and observational studies data into the PRIMUS precision medicine platform. https://doi.org/10.1101/2024.10.17.24315655 [read]
  7. Durand, R., Bellanger, C., Descamps, G., Dousset, C., Maïga, S., Derrien, J., Thirouard, L., Bouard, L., Asnagli, H., Beer, P., Parker, A., Gomez‐Bougie, P., Devilder, M. C., Moreau, P., Touzeau, C., Moreau‐Aubry, A., Chiron, D., & Pellat‐Deceunynck, C. (2024). Combined inhibition of CTPS1 and ATR is a metabolic vulnerability in p53‐deficient myeloma cells. HemaSphere, 8(10). https://doi.org/10.1002/hem3.70016 [read]
  8. Manirakiza, E., Chaumier, T., & Tirichine, L. (2024). Genomic sequences and annotations of two Pseudomonas species isolated from marine and terrestrial habitats. Microbiology Resource Announcements, 13(10). https://doi.org/10.1128/mra.00373-24 [read]
  9. Bhattacharya, N., Rockstroh, A., Deshpande, S. S., Thomas, S. K., Yadav, A., Goswami, C., Chawla, S., Solomon, P., Fourgeux, C., Ahuja, G., Hollier, B. G., Kumar, H., Roquilly, A., Poschmann, J., Lehman, M., Nelson, C. C., & Sengupta, D. (2024). Pseudo-grading of tumor subpopulations from single-cell transcriptomic data using Phenotype Algebra. https://doi.org/10.7554/elife.98469.1 [read]
  10. Brocard, S., Morin, M., dos Santos Brito Silva, N., Renaud-Picard, B., Coiffard, B., Demant, X., Falque, L., Le Pavec, J., Roux, A., Villeneuve, T., Knoop, C., Mornex, J.-F., Salpin, M., Boussaud, V., Rousseau, O., Mauduit, V., Durand, A., Magnan, A., Gourraud, P.-A., … Le Pavec, J. (2024). Description and first insights on a large genomic biobank of lung transplantation. European Journal of Human Genetics. https://doi.org/10.1038/s41431-024-01683-y [read]
  11. Alves, I., Giemza, J., Blum, M. G. B., Bernhardsson, C., Chatel, S., Karakachoff, M., Saint Pierre, A., Herzig, A. F., Olaso, R., Monteil, M., Gallien, V., Cabot, E., Svensson, E., Bacq, D., Baron, E., Berthelier, C., Besse, C., Blanché, H., Bocher, O., … Dina, C. (2024). Human genetic structure in Northwest France provides new insights into West European historical demography. Nature Communications, 15(1). https://doi.org/10.1038/s41467-024-51087-1 [read]
  12. Alves, I., Giemza, J., Blum, M. G. B., Bernhardsson, C., Chatel, S., Karakachoff, M., Saint Pierre, A., Herzig, A. F., Olaso, R., Monteil, M., Gallien, V., Cabot, E., Svensson, E., Bacq, D., Baron, E., Berthelier, C., Besse, C., Blanché, H., Bocher, O., … Dina, C. (2024). Human genetic structure in Northwest France provides new insights into West European historical demography. Nature Communications, 15(1). https://doi.org/10.1038/s41467-024-51087-1 [read]
  13. Chatelain, C., Berland, L., Grard, M., Jouand, N., Fresquet, J., Nader, J., Hirigoyen, U., Petithomme, T., Combredet, C., Pons-Tostivint, E., Fradin, D., Treps, L., Blanquart, C., Boisgerault, N., Tangy, F., & Fonteneau, J.-F. (2024). Interplay between oncolytic measles virus, macrophages and cancer cells induces a proinflammatory tumor microenvironment. OncoImmunology, 13(1). https://doi.org/10.1080/2162402x.2024.2377830 [read]
  14. Michenaud, L., Marrié, N., Rimbert, A., Marmontel, O., Charrière, S., Gibert, C., Bouveyron, C., Mammi, J., Cariou, B., Moulin, P., & Di Filippo, M. (2024). Evaluation of biochemical algorithms to screen dysbetalipoproteinemia in ε2ε2 and rare APOE variants carriers. Clinical Chemistry and Laboratory Medicine (CCLM). https://doi.org/10.1515/cclm-2024-0587 [read]
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2023

Authored

  1. Gaignard, A., Rosnet, T., de Lamotte, F., Lefort, V., & Devignes, M.-D. (2023). FAIR-Checker: supporting digital resource findability and reuse with Knowledge Graphs and Semantic Web standards. Journal of Biomedical Semantics, 14(1), 7. https://doi.org/10.1186/s13326-023-00289-5 [read]
  2. Dang, M.-H., Gaignard, A., Skaf-Molli, H., & Molli, P. (2023, November). Schema.org : How is it used? International Semantic Web Conference (ISWC) 2023. https://hal.science/hal-04250523 [read]
  3. Ienasescu, H.-I., Capella-Gutierrez, S., Coppens, F., Fernandez, J. M., Gaignard, A., Goble, C., Grüning, B., Gustafsson, O. J. R., Gelpí, J. L., Harrow, J., Manos, S., Miura, K., Möller, S., Owen, S., Paul-Gilloteaux, P., Peterson, H., Pithoulias, M., Tedds, J., Repchevsky, D., … Ménager, H. (2023). The ELIXIR research software ecosystem. 24th annual Bioinformatics Open Source Conference (BOSC 2023). https://doi.org/10.7490/f1000research.1119595.1 [read]
  4. Sebe, C., Lemoine, F., Gaignard, A., Ferret, O., Cohen-Boulakia, S., & Névéol, A. (2023). Towards improving workflows reproducibility : Extracting information on workflows from text and code repositories. 31st Annual Intelligent Systems For Molecular Biology and 22nd Annual European Conference on Computational Biology (ISMB/ECCB 2023). https://hal.science/hal-04363577 [read]
  5. Sebe, C., Névéol, A., Cohen-Boulakia, S., & Gaignard, A. (2023). Extraction d’informations sur les workflows scientifiques à partir de la littérature. 23ème Conférence Francophone Sur l’Extraction Et La Gestion Des Connaissances (EGC), Extraction et Gestion des Connaissances, RNTI-E-39, 313–320. https://hal.science/hal-03991363 [read]
  6. Djaffardjy, M., Marchment, G., Sebe, C., Blanchet, R., Belhajjame, K., Gaignard, A., Lemoine, F., & Cohen-Boulakia, S. (2023). Developing and reusing bioinformatics data analysis pipelines using scientific workflow systems. Computational and Structural Biotechnology Journal, 21, 2075–2085. https://doi.org/https://doi.org/10.1016/j.csbj.2023.03.003 [read]

Acknowledged

  1. Durand, R., Descamps, G., Dousset, C., Bellanger, C., Maïga, S., Alberge, J.-B., Derrien, J., Cruard, J., Minvielle, S., Lilli, N. L., GODON, C. A. T. H. E. R. I. N. E., Le Bris, Y., Tessoulin, B., Amiot, M., Gomez-Bougie, P., Touzeau, C., Moreau, P., Chiron, D., Moreau-Aubry, A., & Pellat-Deceunynck, C. (2023). A p53 score derived from TP53 CRISPR/Cas9 HMCLs predicts survival and reveals major role of BAX in BH3 mimetics response. Blood Journal. https://doi.org/10.1182/blood.2023021581 [read]
  2. Montassier, E., Kitsios, G. D., Radder, J. E., Le Bastard, Q., Kelly, B. J., Panzer, A., Lynch, S. V., Calfee, C. S., Dickson, R. P., & Roquilly, A. (2023). Robust airway microbiome signatures in acute respiratory failure and hospital-acquired pneumonia. Nature Medicine, 29(11), 2793–2804. https://doi.org/10.1038/s41591-023-02617-9 [read]
  3. Decombis, S., Bellanger, C., Le Bris, Y., Madiot, C., Jardine, J., Santos, J. C., Boulet, D., Dousset, C., Menard, A., Kervoelen, C., Douillard, E., Moreau, P., Minvielle, S., Moreau-Aubry, A., Tessoulin, B., Roue, G., Bidère, N., Le Gouill, S., Pellat-Deceunynck, C., & Chiron, D. (2023). CARD11 gain of function upregulates BCL2A1 expression and promotes resistance to targeted therapies combination in B-cell lymphoma. Blood, 142(18), 1543–1555. https://doi.org/10.1182/blood.2023020211 [read]
  4. Dekky, B., Azar, F., Bonnier, D., Monseur, C., Kalebić, C., Arpigny, E., Colige, A., Legagneux, V., & Théret, N. (2023). ADAMTS is a stromal modulator in chronic liver disease. The FASEB Journal, 37(11). https://doi.org/10.1096/fj.202200692rrrr [read]
  5. Hendrix, S., Kingma, J., Ottenhoff, R., Valiloo, M., Svecla, M., Zijlstra, L. F., Sachdev, V., Kovac, K., Levels, J. H. M., Jongejan, A., de Boer, J. F., Kuipers, F., Rimbert, A., Norata, G. D., Loregger, A., & Zelcer, N. (2023). Hepatic SREBP signaling requires SPRING to govern systemic lipid metabolism in mice and humans. Nature Communications, 14(1). https://doi.org/10.1038/s41467-023-40943-1 [read]
  6. Riquin, K., Isidor, B., Mercier, S., Nizon, M., Colin, E., Bonneau, D., Pasquier, L., Odent, S., Horn, X. M. L. G., Guyader, G. L., Toutain, A., Meyer, V., Deleuze, J.-F., Pichon, O., Doco-Fenzy, M., Bézieau, S., & Cogné, B. (2023). Integrating RNA-Seq into genome sequencing workflow enhances the analysis of structural variants causing neurodevelopmental disorders. Journal of Medical Genetics, jmg–2023–109263. https://doi.org/10.1136/jmg-2023-109263 [read]
  7. Bessonneau-Gaborit, V., Cruard, J., Guerin-Charbonnel, C., Derrien, J., Alberge, J.-B., Douillard, E., Devic, M., Deshayes, S., Campion, L., Westermann, F., Moreau, P., Herrmann, C., Bourdon, J., Magrangeas, F., & Minvielle, S. (2023). Exploring the impact of dexamethasone on gene regulation in myeloma cells. Life Science Alliance, 6(9), e202302195. https://doi.org/10.26508/lsa.202302195 [read]
  8. Martinez, L., Pouvreau, J.-B., Jestin, C., Montiel, G., Gravot, A., Berardocco, S., Marnet, N., Bouchereau, A., Delage, E., Simier, P., & Poulin, L. (2023). Comparative analysis of two neighboring conducive and suppressive soils towards plant parasitism caused by Phelipanche ramosa L. Pomel on Brassica napus L. https://doi.org/10.21203/rs.3.rs-3059250/v1 [read]
  9. Defois, A., Bon, N., Charpentier, A., Georget, M., Gaigeard, N., Blanchard, F., Hamel, A., Waast, D., Armengaud, J., Renoult, O., Pecqueur, C., Maugars, Y., Boutet, M.-A., Guicheux, J., & Vinatier, C. (2023). Osteoarthritic chondrocytes undergo a glycolysis-related metabolic switch upon exposure to IL-1b or TNF. Cell Communication and Signaling, 21(1). https://doi.org/10.1186/s12964-023-01150-z [read]
  10. Vanhoye, X., Bardel, C., Rimbert, A., Moulin, P., Rollat-Farnier, P.-A., Muntaner, M., Marmontel, O., Dumont, S., Charrière, S., Cornélis, F., Ducluzeau, P. H., Fonteille, A., Nobecourt, E., Peretti, N., Schillo, F., Wargny, M., Cariou, B., Meirhaeghe, A., & Filippo, M. D. (2023). A new 165-SNP low-density lipoprotein cholesterol polygenic risk score based on next generation sequencing outperforms previously published scores in routine diagnostics of familial hypercholesterolemia. Translational Research, 255, 119–127. https://doi.org/10.1016/j.trsl.2022.12.002 [read]
  11. Wu, Y., Chaumier, T., Manirakiza, E., Veluchamy, A., & Tirichine, L. (2023). PhaeoEpiView: an epigenome browser of the newly assembled genome of the model diatom Phaeodactylum tricornutum. Scientific Reports, 13(1). https://doi.org/10.1038/s41598-023-35403-1 [read]
  12. Vanhoye, X., Bardel, C., Rimbert, A., Moulin, P., Rollat-Farnier, P.-A., Muntaner, M., Marmontel, O., Dumont, S., Charrière, S., Cornélis, F., Ducluzeau, P. H., Fonteille, A., Nobecourt, E., Peretti, N., Schillo, F., Wargny, M., Cariou, B., Meirhaeghe, A., & Filippo, M. D. (2023). A new 165-SNP low-density lipoprotein cholesterol polygenic risk score based on next generation sequencing outperforms previously published scores in routine diagnostics of familial hypercholesterolemia. Translational Research, 255, 119–127. https://doi.org/10.1016/j.trsl.2022.12.002 [read]
  13. Maaziz, N., Garrec, C., Airaud, F., Bobée, V., Contentin, N., Cayssials, E., Rimbert, A., Aral, B., Bézieau, S., Gardie, B., & Girodon, F. (2023). Germline JAK2 E846D Substitution as the Cause of Erythrocytosis? Genes, 14(5), 1066. https://doi.org/10.3390/genes14051066 [read]
  14. Sinha, D., Laurent, T., Broquet, A., Fourgeux, C., Letellier, T., Tilly, G., Bruneau, S., Ville, S., Bouchet-Delbos, L., Brancherau, J., Kerleau, C., Brouard, S., Blancho, G., Giral, M., Josien, R., Danger, R., Roquilly, A., Degauque, N., & Poschmann, J. (2023). A Gene-expression Module Identifies Circulating Immune Cells with Enhanced Recruitment to Sites of Inflammation. https://doi.org/10.1101/2023.04.11.536347 [read]
  15. Myasoedova, V. A., Rimbert, A., Camera, M., May, C. L., Capoulade, R., Cariou, B., & Poggio, P. (2023). LDL lowering effect of PCSK9 inhibition is reduced in women. European Heart Journal - Cardiovascular Pharmacotherapy, 9(4), 337–342. https://doi.org/10.1093/ehjcvp/pvad009 [read]
  16. Freneau, M., Blanchet, R., Benichi, S., Mrad, M.-A., Batta, S. P. R., Rio, M., Bonnaud, S., Lindenbaum, P., Laporte, F., Cuénot, S., Quillard, T., Morel, S., Kwak, B. R., Bijlenga, P., Deleuze, J.-F., Dina, C., Bodet, M., Chatel, S., Bourcereau, E., … Redon, R. (2023). Identification of rare missense variants reducing cathepsin O secretion in families with intracranial aneurysm. https://doi.org/10.1101/2023.01.31.23285168 [read]
  17. Freneau, M., Blanchet, R., Benichi, S., Mrad, M.-A., Batta, S. P. R., Rio, M., Bonnaud, S., Lindenbaum, P., Laporte, F., Cuénot, S., Quillard, T., Morel, S., Kwak, B. R., Bijlenga, P., Deleuze, J.-F., Dina, C., Bodet, M., Chatel, S., Bourcereau, E., … Redon, R. (2023). Identification of rare missense variants reducing cathepsin O secretion in families with intracranial aneurysm. https://doi.org/10.1101/2023.01.31.23285168 [read]
  18. Fizanne, L., Villard, A., Benabbou, N., Recoquillon, S., Soleti, R., Delage, E., Wertheimer, M., Vidal-Gómez, X., Oullier, T., Chaffron, S., Martı́nez M. Carmen, Neunlist, M., Boursier, J., & Andriantsitohaina, R. (2023). Faeces-derived extracellular vesicles participate in the onset of barrier dysfunction leading to liver diseases. Journal of Extracellular Vesicles, 12(2). https://doi.org/10.1002/jev2.12303 [read]
  19. Lê, A., Selle, A., Aubert, P., Durand, T., Brosseau, C., Bordron, P., Delage, E., Chaffron, S., Petitfils, C., Cenac, N., Neunlist, M., Bodinier, M., & Rolli-Derkinderen, M. (2023). Maternal prebiotic supplementation impacts colitis development in offspring mice. Frontiers in Nutrition, 9. https://doi.org/10.3389/fnut.2022.988529 [read]
  20. Nguyen, N.-K., Devilder, M.-C., Gautreau-Rolland, L., Fourgeux, C., Sinha, D., Poschmann, J., Hourmant, M., Bressollette-Bodin, C., Saulquin, X., & McIlroy, D. (2023). A cluster of broadly neutralizing IgG against BK polyomavirus in a repertoire dominated by IgM. Life Science Alliance, 6(4), e202201567. https://doi.org/10.26508/lsa.202201567 [read]
  21. Dijoux, E., Klein, M., Misme-Aucouturier, B., Cheminant, M.-A., de Carvalho, M., Collin, L., Hassoun, D., Delage, E., Gourdel, M., Loirand, G., Sauzeau, V., Magnan, A., & Bouchaud, G. (2023). Allergic Sensitization Driving Immune Phenotyping and Disease Severity in a Mouse Model of Asthma. Allergy, Asthma &Amp\Mathsemicolon Immunology Research, 15(2), 246. https://doi.org/10.4168/aair.2023.15.2.246 [read]
  22. Bolteau, M., Bourdon, J., David, L., & Guziolowski, C. (2023). Inferring Boolean Networks from Single-Cell Human Embryo Datasets. In Lecture Notes in Computer Science (pp. 431–441). Springer Nature Singapore. https://doi.org/10.1007/978-981-99-7074-2_34 [read]

2022

Authored

  1. Jotereau, F., Alameddine, J., Teusan, R., Pédron, A., Jouand, N., Altare, F., & Godefroy, E. (2022). Human gut microbiota-reactive DP8\upalpha regulatory T cells, signature and related emerging functions. Frontiers in Immunology, 13. https://doi.org/10.3389/fimmu.2022.1026994 [read]
  2. Churcheward, B., Millet, M., Bihouée, A., Fertin, G., & Chaffron, S. (2022). MAGNETO: An Automated Workflow for Genome-Resolved Metagenomics. MSystems, 7(4). https://doi.org/10.1128/msystems.00432-22 [read]
  3. Dominguez-Huerta, G., Zayed, A. A., Wainaina, J. M., Guo, J., Tian, F., Pratama, A. A., Bolduc, B., Mohssen, M., Zablocki, O., Pelletier, E., Delage, E., Alberti, A., Aury, J.-M., Carradec, Q., da Silva, C., Labadie, K., Poulain, J., Bowler, C., Eveillard, D., … and, M. B. S. (2022). Diversity and ecological footprint of Global Ocean RNA viruses. Science, 376(6598), 1202–1208. https://doi.org/10.1126/science.abn6358 [read]
  4. Zayed, A. A., Wainaina, J. M., Dominguez-Huerta, G., Pelletier, E., Guo, J., Mohssen, M., Tian, F., Pratama, A. A., Bolduc, B., Zablocki, O., Cronin, D., Solden, L., Delage, E., Alberti, A., Aury, J.-M., Carradec, Q., da Silva, C., Labadie, K., Poulain, J., … and, P. W. (2022). Cryptic and abundant marine viruses at the evolutionary origins of Earth’s RNA virome. Science, 376(6589), 156–162. https://doi.org/10.1126/science.abm5847 [read]
  5. Misme-Aucouturier, B., Carvalho, M. D., Delage, E., Dijoux, E., Klein, M., Brosseau, C., Bodinier, M., Guzylack-Piriou, L., & Bouchaud, G. (2022). Oral exposure to bisphenol A exacerbates allergic inflammation in a mouse model of food allergy. Toxicology, 472, 153188. https://doi.org/10.1016/j.tox.2022.153188 [read]
  6. Barc, J., Tadros, R., Glinge, C., Chiang, D. Y., Jouni, M., Simonet, F., Jurgens, S. J., Baudic, M., Nicastro, M., Potet, F., Offerhaus, J. A., Walsh, R., Choi, S. H., Verkerk, A. O., Mizusawa, Y., Anys, S., Minois, D., Arnaud, M., Duchateau, J., … and. (2022). Genome-wide association analyses identify new Brugada syndrome risk loci and highlight a new mechanism of sodium channel regulation in disease susceptibility. Nature Genetics, 54(3), 232–239. https://doi.org/10.1038/s41588-021-01007-6 [read]
  7. Alves, I., Giemza, J., Blum, M., Bernhardsson, C., Chatel, S., Karakachoff, M., Pierre, A. S., Herzig, A. F., Olaso, R., Monteil, M., Gallien, V., Cabot, E., Svensson, E., Bacq-Daian, D., Baron, E., Berthelier, C., Besse, C., Blanché, H., Bocher, O., … Dina, C. (2022). Genetic population structure across Brittany and the downstream Loire basin provides new insights on the demographic history of Western Europe. https://doi.org/10.1101/2022.02.03.478491 [read]
  8. Lamothe, L., Gaignard, A., Kierkegaard, M., Hager Eldakroury, Black, M., Brancotte, B., Ison, J., Schwämmle, V., Kalaš, M., & Ménager, H. (2022). EDAM, life sciences ontology for data analysis and management. https://doi.org/10.5281/ZENODO.6769072 [read]
  9. Garzón, W., Benavides, L., Gaignard, A., Redon, R., & Südholt, M. (2022). A taxonomy of tools and approaches for distributed genomic analyses. Informatics in Medicine Unlocked, 32, 101024. https://doi.org/10.1016/j.imu.2022.101024 [read]

Acknowledged

  1. Canac, R., Cimarosti, B., Girardeau, A., Forest, V., Olchesqui, P., Poschmann, J., Redon, R., Lemarchand, P., Gaborit, N., & Lamirault, G. (2022). Deciphering Transcriptional Networks during Human Cardiac Development. Cells, 11(23), 3915. https://doi.org/10.3390/cells11233915 [read]
  2. Flippe, L., Gaignerie, A., Sérazin, C., Baron, O., Saulquin, X., Anegon, I., David, L., & Guillonneau, C. (2022). Generation of CD34\mathplusCD43\mathplus Hematopoietic Progenitors to Induce Thymocytes from Human Pluripotent Stem Cells. Cells, 11(24), 4046. https://doi.org/10.3390/cells11244046 [read]
  3. Canac, R., Cimarosti, B., Girardeau, A., Forest, V., Olchesqui, P., Poschmann, J., Redon, R., Lemarchand, P., Gaborit, N., & Lamirault, G. (2022). Deciphering Transcriptional Networks during Human Cardiac Development. Cells, 11(23), 3915. https://doi.org/10.3390/cells11233915 [read]
  4. Martinez, L., Pouvreau, J.-B., Montiel, G., Jestin, C., Delavault, P., Simier, P., & Poulin, L. (2022). Soil microbiota promotes early developmental stages of Phelipanche ramosa L. Pomel during plant parasitism on Brassica napus L. Plant and Soil, 483(1-2), 667–691. https://doi.org/10.1007/s11104-022-05822-6 [read]
  5. Drouin, M., Saenz, J., Gauttier, V., Evrard, B., Teppaz, G., Pengam, S., Mary, C., Desselle, A., Thepenier, V., Wilhelm, E., Merieau, E., Ligeron, C., Girault, I., Lopez, M.-D., Fourgeux, C., Sinha, D., Baccelli, I., Moreau, A., Louvet, C., … Chiffoleau, E. (2022). CLEC-1 is a death sensor that limits antigen cross-presentation by dendritic cells and represents a target for cancer immunotherapy. Science Advances, 8(46). https://doi.org/10.1126/sciadv.abo7621 [read]
  6. André-Grégoire, G., Maghe, C., Douanne, T., Rosińska, S., Spinelli, F., Thys, A., Trillet, K., Jacobs, K. A., Ballu, C., Dupont, A., Lyne, A.-M., Cavalli, F. M. G., Busnelli, I., Hyenne, V., Goetz, J. G., Bidère, N., & Gavard, J. (2022). Inhibition of the pseudokinase MLKL alters extracellular vesicle release and reduces tumor growth in glioblastoma. IScience, 25(10), 105118. https://doi.org/10.1016/j.isci.2022.105118 [read]
  7. Picault, S., Ezanno, P., Smith, K., Amrine, D., White, B., & Assié, S. (2022). Modelling the effects of antimicrobial metaphylaxis and pen size on bovine respiratory disease in high and low risk fattening cattle. Veterinary Research, 53(1). https://doi.org/10.1186/s13567-022-01094-1 [read]
  8. Bonneaud, T. L., Lefebvre, C. C., Nocquet, L., Basseville, A., Roul, J., Weber, H., Campone, M., Juin, P. P., & Souazé, F. (2022). Targeting of MCL-1 in breast cancer-associated fibroblasts reverses their myofibroblastic phenotype and pro-invasive properties. Cell Death &Amp\Mathsemicolon Disease, 13(9). https://doi.org/10.1038/s41419-022-05214-9 [read]
  9. McIlroy, D., Peltier, C., Nguyen, M.-L., Manceau, L., Mobuchon, L., Baut, N. L., Nguyen, N.-K., Tran, M.-C., Nguyen, T.-C., & Bressollette-Bodin, C. (2022). Quantification of APOBEC3 Mutation Rates Affecting the VP1 Gene of BK Polyomavirus In Vivo. Viruses, 14(9), 2077. https://doi.org/10.3390/v14092077 [read]
  10. Ezanno, P., Picault, S., Bareille, S., Beaunée, G., Boender, G. J., Dankwa, E. A., Deslandes, F., Donnelly, C. A., Hagenaars, T. J., Hayes, S., Jori, F., Lambert, S., Mancini, M., Munoz, F., Pleydell, D. R. J., Thompson, R. N., Vergu, E., Vignes, M., & Vergne, T. (2022). The African swine fever modelling challenge: Model comparison and lessons learnt. Epidemics, 40, 100615. https://doi.org/10.1016/j.epidem.2022.100615 [read]
  11. Batta, S. P. R., Rio, M., Lebot, C., Baron-Menguy, C., Ruz, R. L., Loirand, G., & Vion, A.-C. (2022). ARHGEF18 participates in Endothelial Cell Mechano-sensitivity in Response to Flow. https://doi.org/10.1101/2022.09.10.507283 [read]
  12. Morel, S., Hostettler, I. C., Spinner, G. R., Bourcier, R., Pera, J., Meling, T. R., Alg, V. S., Houlden, H., Bakker, M. K., van’t Hof, F., Rinkel, G. J. E., Foroud, T., Lai, D., Moomaw, C. J., Worrall, B. B., Caroff, J., Constant-dits-Beaufils, P., Karakachoff, M., Rimbert, A., … and. (2022). Intracranial Aneurysm Classifier Using Phenotypic Factors: An International Pooled Analysis. Journal of Personalized Medicine, 12(9), 1410. https://doi.org/10.3390/jpm12091410 [read]
  13. Delwarde, C., Toquet, C., Aumond, P., Kayvanjoo, A. H., Foucal, A., Vely, B. L., Baudic, M., Lauzier, B., Blandin, S., Véziers, J., Paul-Gilloteaux, P., Lecointe, S., Baron, E., Massaiu, I., Poggio, P., Rémy, S., Anegon, I., Marec, H. L., Monassier, L., … Capoulade, R. (2022). Multimodality imaging and transcriptomics to phenotype mitral valve dystrophy in a unique knock-in Filamin-A rat model. Cardiovascular Research, 119(3), 759–771. https://doi.org/10.1093/cvr/cvac136 [read]
  14. Chaumette, T., Cinotti, R., Mollé, A., Solomon, P., Castain, L., Fourgeux, C., McWilliam, H. E. G., Misme-Aucouturier, B., Broquet, A., Jacqueline, C., Vourc’h, M., Fradin, D., Bossard, C., David, L., Montassier, E., Braudeau, C., Josien, R., Villadangos, J. A., Asehnoune, K., … Roquilly, A. (2022). Monocyte Signature Associated with Herpes Simplex Virus Reactivation and Neurological Recovery after Brain Injury. American Journal of Respiratory and Critical Care Medicine, 206(3), 295–310. https://doi.org/10.1164/rccm.202110-2324oc [read]
  15. Autin, P., Deshayes, S., Lea, J., Boisgerault, N., Dupré, E., Labarrière, N., Leguevel, R., Fonteneau, J.-F., Blanquart, C., & Fradin, D. (2022). The DCMU Herbicide Shapes T-cell Functions By Modulating Micro-RNA Expression Profiles. Frontiers in Immunology, 13. https://doi.org/10.3389/fimmu.2022.925241 [read]
  16. Goudal, A., Karakachoff, M., Lindenbaum, P., Baron, E., Bonnaud, S., Kyndt, F., Arnaud, M., Minois, D., Bourcereau, E., Thollet, A., Deleuze, J.-F., Genin, E., Wiart, F., Pasquié, J.-L., Galand, V., Sacher, F., Dina, C., Redon, R., Bezieau, S., … Barc, J. (2022). Burden of rare variants in arrhythmogenic cardiomyopathy with right dominant form-associated genes provides new insights for molecular diagnosis and clinical management. Human Mutation, 43(9), 1333–1342. https://doi.org/10.1002/humu.24436 [read]
  17. Dupas, T., Persello, A., Blangy-Letheule, A., Denis, M., Erraud, A., Aillerie, V., Leroux, A. A., Rivière, M., Lebreton, J., Tessier, A., Rozec, B., & Lauzier, B. (2022). Beneficial Effects of O-GlcNAc Stimulation in a Young Rat Model of Sepsis: Beyond Modulation of Gene Expression. International Journal of Molecular Sciences, 23(12), 6430. https://doi.org/10.3390/ijms23126430 [read]
  18. Herzig, A. F., Ciullo, M., Deleuze, J.-F., Génin, E., Redon, R., Adjou, C., Chatel, S., Férec, C., Goldberg, M., Halbout, P.-A., Marec, H. L., L’Helgouach, D., Rouault, K., Schott, J.-J., Vogelsperger, A., Zins, M., Bacq, D., Blanchet, H., Boland, A., … and, H. P. (2022). Moment estimators of relatedness from low-depth whole-genome sequencing data. BMC Bioinformatics, 23(1). https://doi.org/10.1186/s12859-022-04795-8 [read]
  19. Basseville, A., Violet, P.-C., Safari, M., Sourbier, C., Linehan, W. M., Robey, R. W., Levine, M., Sackett, D. L., & Bates, S. E. (2022). A Histone Deacetylase Inhibitor Induces Acetyl-CoA Depletion Leading to Lethal Metabolic Stress in RAS-Pathway Activated Cells. Cancers, 14(11), 2643. https://doi.org/10.3390/cancers14112643 [read]
  20. Régimbeau, A., Budinich, M., Larhlimi, A., Karlusich, J. J. P., Aumont, O., Memery, L., Bowler, C., & Eveillard, D. (2022). Contribution of genome-scale metabolic modelling to niche theory. Ecology Letters, 25(6), 1352–1364. https://doi.org/10.1111/ele.13954 [read]
  21. Cimarosti, B., Canac, R., Waard, S. D., Girardeau, A., Gaignerie, A., Derevier, A., Forest, V., Ronjat, M., Marec, H. L., Gourraud, J.-B., Lemarchand, P., Waard, M. D., Lamirault, G., & Gaborit, N. (2022). Generation of human induced pluripotent stem cell lines from three patients affected by Catecholaminergic Polymorphic ventricular tachycardia (CPVT) carrying heterozygous mutations in RYR2 gene. Stem Cell Research, 60, 102688. https://doi.org/10.1016/j.scr.2022.102688 [read]
  22. Tran, N. T., Lecomte, E., Saleun, S., Namkung, S., Robin, C., Weber, K., Devine, E., Blouin, V., Adjali, O., Ayuso, E., Gao, G., Penaud-Budloo, M., & Tai, P. W. L. (2022). Human and Insect Cell-Produced Recombinant Adeno-Associated Viruses Show Differences in Genome Heterogeneity. Human Gene Therapy, 33(7-8), 371–388. https://doi.org/10.1089/hum.2022.050 [read]
  23. Girardeau, A., Atticus, D., Canac, R., Cimarosti, B., Caillaud, A., Chariau, C., Simonet, F., Cariou, B., Charpentier, F., Gourraud, J.-B., Probst, V., Belbachir, N., Jesel, L., Lemarchand, P., Barc, J., Redon, R., Gaborit, N., & Lamirault, G. (2022). Generation of human induced pluripotent stem cell lines from four unrelated healthy control donors carrying European genetic background. Stem Cell Research, 59, 102647. https://doi.org/10.1016/j.scr.2021.102647 [read]
  24. Küry, S., Ebstein, F., Mollé, A., Besnard, T., Lee, M.-K., Vignard, V., Hery, T., Nizon, M., Mancini, G. M. S., Giltay, J. C., Cogné, B., McWalter, K., Deb, W., Mor-Shaked, H., Li, H., Schnur, R. E., Wentzensen, I. M., Denommé-Pichon, A.-S., Fourgeux, C., … Isidor, B. (2022). Rare germline heterozygous missense variants in BRCA1-associated protein 1, BAP1, cause a syndromic neurodevelopmental disorder. The American Journal of Human Genetics, 109(2), 361–372. https://doi.org/10.1016/j.ajhg.2021.12.011 [read]
  25. Alberge, J.-B., Kraeber-Bodéré, F., Jamet, B., Touzeau, C., Caillon, H., Wuilleme, S., Béné, M.-C., Kampfenkel, T., Sonneveld, P., van Duin, M., Avet-Loiseau, H., Corre, J., Magrangeas, F., Carlier, T., Bodet-Milin, C., Chérel, M., Moreau, P., Minvielle, S., & Bailly, C. (2022). Molecular Signature of \lesssup\greater18\less/sup\greaterF-FDG PET Biomarkers in Newly Diagnosed Multiple Myeloma Patients: A Genome-Wide Transcriptome Analysis from the CASSIOPET Study. Journal of Nuclear Medicine, 63(7), 1008–1013. https://doi.org/10.2967/jnumed.121.262884 [read]
  26. Combot, Y., Salo, V. T., Chadeuf, G., Hölttä, M., Ven, K., Pulli, I., Ducheix, S., Pecqueur, C., Renoult, O., Lak, B., Li, S., Karhinen, L., Belevich, I., May, C. L., Rieusset, J., Lay, S. L., Croyal, M., Tayeb, K. S., Vihinen, H., … Prieur, X. (2022). Seipin localizes at endoplasmic-reticulum-mitochondria contact sites to control mitochondrial calcium import and metabolism in adipocytes. Cell Reports, 38(2), 110213. https://doi.org/10.1016/j.celrep.2021.110213 [read]

2021

Authored

  1. Meistermann, D., Bruneau, A., Loubersac, S., Reignier, A., Firmin, J., François-Campion, V., Kilens, S., Lelièvre, Y., Lammers, J., Feyeux, M., Hulin, P., Nedellec, S., Bretin, B., Castel, G., Allègre, N., Covin, S., Bihouée, A., Soumillon, M., Mikkelsen, T., … David, L. (2021). Integrated pseudotime analysis of human pre-implantation embryo single-cell transcriptomes reveals the dynamics of lineage specification. Cell Stem Cell, 28(9), 1625–1640.e6. https://doi.org/10.1016/j.stem.2021.04.027 [read]
  2. Deutschmann, I. M., Krabberød, A. K., Latorre, F., Delage, E., Marrasé, C., Balagué, V., Gasol, J. M., Massana, R., Eveillard, D., Chaffron, S., & Logares, R. (2021). Disentangling temporal associations in marine microbial networks. https://doi.org/10.1101/2021.07.13.452187 [read]
  3. Sayed, Z. R. A., Jouni, M., Gourraud, J.-B., Belbachir, N., Barc, J., Girardeau, A., Forest, V., Derevier, A., Gaignerie, A., Chariau, C., Cimarosti, B., Canac, R., Olchesqui, P., Charpentier, E., Schott, J.-J., Redon, R., Baró, I., Probst, V., Charpentier, F., … Gaborit, N. (2021). A consistent arrhythmogenic trait in Brugada syndrome cellular phenotype. Clinical and Translational Medicine, 11(6). https://doi.org/10.1002/ctm2.413 [read]
  4. Zoppi, J., Guillaume, J.-F., Neunlist, M., & Chaffron, S. (2021). MiBiOmics: an interactive web application for multi-omics data exploration and integration. BMC Bioinformatics, 22(1). https://doi.org/10.1186/s12859-020-03921-8 [read]
  5. Ison, J., Ienasescu, H., Rydza, E., Chmura, P., Rapacki, K., Gaignard, A., Schwämmle, V., van Helden, J., Kalaš, M., & Ménager, H. (2021). biotoolsSchema: a formalized schema for bioinformatics software description. GigaScience, 10(1). https://doi.org/10.1093/gigascience/giaa157 [read]
  6. Lefebvre, M., Gaignard, A., Folschette, M., Bourdon, J., & Guziolowski, C. (2021). Large-scale regulatory and signaling network assembly through linked open data. Database, 2021. https://doi.org/10.1093/database/baaa113 [read]
  7. Charpentier, E., Cornec, M., Dumont, S., Meistermann, D., Bordron, P., David, L., Redon, R., Bonnaud, S., & Bihouée, A. (2021). 3’ RNA sequencing for robust and low-cost gene expression profiling. https://doi.org/10.21203/rs.3.pex-1336/v1 [read]

Acknowledged

  1. Roudaut, M., Idriss, S., Caillaud, A., Girardeau, A., Rimbert, A., Champon, B., David, A., Lévêque, A., Arnaud, L., Pichelin, M., Prieur, X., Prat, A., Seidah, N. G., Zibara, K., May, C. L., Cariou, B., & Si-Tayeb, K. (2021). PCSK9 regulates the NODAL signaling pathway and cellular proliferation in hiPSCs. Stem Cell Reports, 16(12), 2958–2972. https://doi.org/10.1016/j.stemcr.2021.10.004 [read]
  2. Danger, R., Moiteaux, Q., Feseha, Y., Geffard, E., Ramstein, G., & Brouard, S. (2021). FaDA: A web application for regular laboratory data analyses. PLOS ONE, 16(12), e0261083. https://doi.org/10.1371/journal.pone.0261083 [read]
  3. Rose, S., Cuvellier, M., Ezan, F., Carteret, J., Bruyère, A., Legagneux, V., Nesslany, F., Baffet, G., & Langouët, S. (2021). DMSO-free highly differentiated HepaRG spheroids for chronic toxicity, liver functions and genotoxicity studies. Archives of Toxicology, 96(1), 243–258. https://doi.org/10.1007/s00204-021-03178-x [read]
  4. Chaffron, S., Delage, E., Budinich, M., Vintache, D., Henry, N., Nef, C., Ardyna, M., Zayed, A. A., Junger, P. C., Galand, P. E., Lovejoy, C., Murray, A. E., Sarmento, H., Acinas, S. G., Babin, M., Iudicone, D., Jaillon, O., Karsenti, E., Wincker, P., … and, D. E. (2021). Environmental vulnerability of the global ocean epipelagic plankton community interactome. Science Advances, 7(35). https://doi.org/10.1126/sciadv.abg1921 [read]
  5. Gonzales, J., Marchix, J., Aymeric, L., Berre-Scoul, C. L., Zoppi, J., Bordron, P., Burel, M., Davidovic, L., Richard, J.-R., Gaman, A., Lejuste, F., Brouillet, J. Z., Vacon, F. L., Chaffron, S., Leboyer, M., Boudin, H., & Neunlist, M. (2021). Fecal Supernatant from Adult with Autism Spectrum Disorder Alters Digestive Functions, Intestinal Epithelial Barrier, and Enteric Nervous System. Microorganisms, 9(8), 1723. https://doi.org/10.3390/microorganisms9081723 [read]
  6. Montassier, E., Valdés-Mas, R., Batard, E., Zmora, N., Dori-Bachash, M., Suez, J., & Elinav, E. (2021). Probiotics impact the antibiotic resistance gene reservoir along the human GI tract in a person-specific and antibiotic-dependent manner. Nature Microbiology, 6(8), 1043–1054. https://doi.org/10.1038/s41564-021-00920-0 [read]
  7. Mutala, L. B., Deleine, C., Karakachoff, M., Dansette, D., Ducoin, K., Oger, R., Rousseau, O., Podevin, J., Duchalais, E., Fourquier, P., Thomas, W. E. A., Gourraud, P.-A., Bennouna, J., Brochier, C., Gervois, N., Bossard, C., & Jarry, A. (2021). The Caspase-1/IL-18 Axis of the Inflammasome in Tumor Cells: A Modulator of the Th1/Tc1 Response of Tumor-Infiltrating T Lymphocytes in Colorectal Cancer. Cancers, 13(2), 189. https://doi.org/10.3390/cancers13020189 [read]
  8. Moreau, F., Thédrez, A., Garçon, D., Ayer, A., Sotin, T., Dijk, W., Blanchard, C., Chadeuf, G., Arnaud, L., Croyal, M., Landeghem, L. V., Touvron, M., Prieur, X., Roubtsova, A., Seidah, N., Prat, A., Cariou, B., & May, C. L. (2021). PCSK9 is not secreted from mature differentiated intestinal cells. Journal of Lipid Research, 62, 100096. https://doi.org/10.1016/j.jlr.2021.100096 [read]

2020

Authored

  1. Castel, G., Meistermann, D., Bretin, B., Firmin, J., Blin, J., Loubersac, S., Bruneau, A., Chevolleau, S., Kilens, S., Chariau, C., Gaignerie, A., Francheteau, Q., Kagawa, H., Charpentier, E., Flippe, L., François–Campion, V., Haider, S., Dietrich, B., Knöfler, M., … David, L. (2020). Induction of Human Trophoblast Stem Cells from Somatic Cells and Pluripotent Stem Cells. Cell Reports, 33(8), 108419. https://doi.org/10.1016/j.celrep.2020.108419 [read]
  2. Rousseau, O., Karakachoff, M., Gaignard, A., Bellanger, L., Bijlenga, P., Beaufils, P. C. D., L’Allinec, V., Levrier, O., Aguettaz, P., Desilles, J.-P., Michelozzi, C., Marnat, G., Vion, A.-C., Loirand, G., Desal, H., Redon, R., Gourraud, P.-A., & Bourcier, R. (2020). Location of intracranial aneurysms is the main factor associated with rupture in the ICAN population. Journal of Neurology, Neurosurgery &Amp\Mathsemicolon Psychiatry, 92(2), 122–128. https://doi.org/10.1136/jnnp-2020-324371 [read]
  3. Nouri, A., Autrusseau, F., Bourcier, R., Gaignard, A., L’allinec, V., Menguy, C., Véziers, J., Desal, H., Loirand, G., & Redon, R. (2020). Characterization of 3D bifurcations in micro-scan and MRA-TOF images of cerebral vasculature for prediction of intra-cranial aneurysms. Computerized Medical Imaging and Graphics, 84, 101751. https://doi.org/10.1016/j.compmedimag.2020.101751 [read]
  4. Patin, J., Castro, C., Steenman, M., Hivonnait, A., Carcouët, A., Tessier, A., Lebreton, J., Bihouée, A., Donnart, A., Marec, H. L., Baró, I., Charpentier, F., & Derangeon, M. (2020). Gap-134, a Connexin43 activator, prevents age-related development of ventricular fibrosis in Scn5a- mice. Pharmacological Research, 159, 104922. https://doi.org/10.1016/j.phrs.2020.104922 [read]
  5. Gaignard, A., Skaf-Molli, H., & Belhajjame, K. (2020). Findable and reusable workflow data products: A genomic workflow case study. Semantic Web, 11(5), 751–763. https://doi.org/10.3233/sw-200374 [read]
  6. Huet, S., Pouvreau, J.-B., Delage, E., Delgrange, S., Marais, C., Bahut, M., Delavault, P., Simier, P., & Poulin, L. (2020). Populations of the Parasitic Plant Phelipanche ramosa Influence Their Seed Microbiota. Frontiers in Plant Science, 11. https://doi.org/10.3389/fpls.2020.01075 [read]
  7. L’Allinec, V., Chatel, S., Karakachoff, M., Bourcereau, E., Lamoureux, Z., Gaignard, A., Autrusseau, F., Jouan, S., Vion, A.-C., Loirand, G., Desal, H., Naggara, O., Redon, R., Edjlali, M., & and, R. B. (2020). Prediction of Unruptured Intracranial Aneurysm Evolution: The UCAN Project. Neurosurgery, 87(1), 150–156. https://doi.org/10.1093/neuros/nyaa093 [read]
  8. Chénais Benoı̂t, Cornec, M., Dumont, S., Marchand, J., & Blanckaert, V. (2020). Transcriptomic Response of Breast Cancer Cells MDA-MB-231 to Docosahexaenoic Acid: Downregulation of Lipid and Cholesterol Metabolism Genes and Upregulation of Genes of the Pro-Apoptotic ER-Stress Pathway. International Journal of Environmental Research and Public Health, 17(10), 3746. https://doi.org/10.3390/ijerph17103746 [read]
  9. Rabé, M., Dumont, S., Álvarez-Arenas, A., Janati, H., Belmonte-Beitia, J., Calvo, G. F., Thibault-Carpentier, C., Séry, Q., Chauvin, C., Joalland, N., Briand, F., Blandin, S., Scotet, E., Pecqueur, C., Clairambault, J., Oliver, L., Perez-Garcia, V., Nadaradjane, A., Cartron, P.-F., … Vallette, F. M. (2020). Identification of a transient state during the acquisition of temozolomide resistance in glioblastoma. Cell Death &Amp\Mathsemicolon Disease, 11(1). https://doi.org/10.1038/s41419-019-2200-2 [read]

Acknowledged

  1. Bakker, M. K., and Rick A. A. van der Spek, van Rheenen, W., Morel, S., Bourcier, R., Hostettler, I. C., Alg, V. S., van Eijk, K. R., Koido, M., Akiyama, M., Terao, C., Matsuda, K., Walters, R. G., Lin, K., Li, L., Millwood, I. Y., Chen, Z., Rouleau, G. A., Zhou, S., … and. (2020). Genome-wide association study of intracranial aneurysms identifies 17 risk loci and genetic overlap with clinical risk factors. Nature Genetics, 52(12), 1303–1313. https://doi.org/10.1038/s41588-020-00725-7 [read]
  2. Lecomte, E., Saleun, S., Bolteau, M., Guy-Duché, A., Adjali, O., Blouin, V., Penaud-Budloo, M., & Ayuso, E. (2020). The SSV-Seq 2.0 PCR-Free Method Improves the Sequencing of Adeno-Associated Viral Vector Genomes Containing GC-Rich Regions and Homopolymers. Biotechnology Journal, 16(1). https://doi.org/10.1002/biot.202000016 [read]
  3. Alberge, J.-B., Magrangeas, F., Wagner, M., Denié, S., Guérin-Charbonnel, C., Campion, L., Attal, M., Avet-Loiseau, H., Carell, T., Moreau, P., Minvielle, S., & Sérandour, A. A. (2020). DNA hydroxymethylation is associated with disease severity and persists at enhancers of oncogenic regions in multiple myeloma. Clinical Epigenetics, 12(1). https://doi.org/10.1186/s13148-020-00953-y [read]
  4. Sayed, Z. R. A., Canac, R., Cimarosti, B., Bonnard, C., Gourraud, J.-B., Hamamy, H., Kayserili, H., Girardeau, A., Jouni, M., Jacob, N., Gaignerie, A., Chariau, C., David, L., Forest, V., Marionneau, C., Charpentier, F., Loussouarn, G., Lamirault, G., Reversade, B., … Gaborit, N. (2020). Human model of \lessi\greaterIRX5\less/i\greater mutations reveals key role for this transcription factor in ventricular conduction. Cardiovascular Research, 117(9), 2092–2107. https://doi.org/10.1093/cvr/cvaa259 [read]
  5. Roquilly, A., Jacqueline, C., Davieau, M., Mollé, A., Sadek, A., Fourgeux, C., Rooze, P., Broquet, A., Misme-Aucouturier, B., Chaumette, T., Vourc’h, M., Cinotti, R., Marec, N., Gauttier, V., McWilliam, H. E. G., Altare, F., Poschmann, J., Villadangos, J. A., & Asehnoune, K. (2020). Alveolar macrophages are epigenetically altered after inflammation, leading to long-term lung immunoparalysis. Nature Immunology, 21(6), 636–648. https://doi.org/10.1038/s41590-020-0673-x [read]
  6. Seiller, C., Maiga, S., Touzeau, C., Bellanger, C., Kervoëlen, C., Descamps, G., Maillet, L., Moreau, P., Pellat-Deceunynck, C., Gomez-Bougie, P., & Amiot, M. (2020). Dual targeting of BCL2 and MCL1 rescues myeloma cells resistant to BCL2 and MCL1 inhibitors associated with the formation of BAX/BAK hetero-complexes. Cell Death &Amp\Mathsemicolon Disease, 11(5). https://doi.org/10.1038/s41419-020-2505-1 [read]
  7. Frapin, M., Guignard, S., Meistermann, D., Grit, I., Moullé, V. S., Paillé, V., Parnet, P., & Amarger, V. (2020). Maternal Protein Restriction in Rats Alters the Expression of Genes Involved in Mitochondrial Metabolism and Epitranscriptomics in Fetal Hypothalamus. Nutrients, 12(5), 1464. https://doi.org/10.3390/nu12051464 [read]
  8. Pierre, A. S., Giemza, J., Alves, I., Karakachoff, M., Gaudin, M., Amouyel, P., Dartigues, J.-F., Tzourio, C., Monteil, M., Galan, P., Hercberg, S., Mathieson, I., Redon, R., Génin, E., & Dina, C. (2020). Correction: The genetic history of France. European Journal of Human Genetics, 28(7), 988–988. https://doi.org/10.1038/s41431-020-0604-1 [read]
  9. Pham, T. H., Lecomte, S., Guevel, R. L., Lardenois, A., Evrard, B., Chalmel, F., Ferriere, F., Balaguer, P., Efstathiou, T., & Pakdel, F. (2020). Characterization of Glyceollins as Novel Aryl Hydrocarbon Receptor Ligands and Their Role in Cell Migration. International Journal of Molecular Sciences, 21(4), 1368. https://doi.org/10.3390/ijms21041368 [read]
  10. Montassier, E., Al-Ghalith, G. A., Mathé, C., Bastard, Q. L., Douillard, V., Garnier, A., Guimon, R., Raimondeau, B., Touchefeu, Y., Duchalais, E., Vince, N., Limou, S., Gourraud, P.-A., Laplaud, D. A., Nicot, A. B., Soulillou, J.-P., & Berthelot, L. (2020). Distribution of Bacterial \upalpha1,3-Galactosyltransferase Genes in the Human Gut Microbiome. Frontiers in Immunology, 10. https://doi.org/10.3389/fimmu.2019.03000 [read]

2019

Authored

  1. Belbachir, N., Portero, V., Sayed, Z. R. A., Gourraud, J.-B., Dilasser, F., Jesel, L., Guo, H., Wu, H., Gaborit, N., Guilluy, C., Girardeau, A., Bonnaud, S., Simonet, F., Karakachoff, M., Pattier, S., Scott, C., Burel, S., Marionneau, C., Chariau, C., … Scouarnec, S. L. (2019). \lessi\greaterRRAD\less/i\greater mutation causes electrical and cytoskeletal defects in cardiomyocytes derived from a familial case of Brugada syndrome. European Heart Journal, 40(37), 3081–3094. https://doi.org/10.1093/eurheartj/ehz308 [read]
  2. Leveque, X., Hochane, M., Geraldo, F., Dumont, S., Gratas, C., Oliver, L., Gaignier, C., Trichet, V., Layrolle, P., Heymann, D., Herault, O., Vallette, F. M., & Olivier, C. (2019). Low-Dose Pesticide Mixture Induces Accelerated Mesenchymal Stem Cell Aging In Vitro. Stem Cells, 37(8), 1083–1094. https://doi.org/10.1002/stem.3014 [read]
  3. Thériault, S., Dina, C., Messika-Zeitoun, D., Scouarnec, S. L., Capoulade, R., Gaudreault, N., Rigade, S., Li, Z., Simonet, F., Lamontagne, M., Clavel, M.-A., Arsenault, B. J., Boureau, A.-S., Lecointe, S., Baron, E., Bonnaud, S., Karakachoff, M., Charpentier, E., Fellah, I., … and, J.-J. S. (2019). Genetic association analyses highlight \lessi\greaterIL6\less/i\greater, \lessi\greaterALPL\less/i\greater, and \lessi\greaterNAV1\less/i\greater as three new susceptibility genes underlying calcific aortic valve stenosis. https://doi.org/10.1101/515494 [read]

Acknowledged

  1. Bastard, Q. L., Vangay, P., Batard, E., Knights, D., & Montassier, E. (2019). US Immigration Is Associated With Rapid and Persistent Acquisition of Antibiotic Resistance Genes in the Gut. Clinical Infectious Diseases, 71(2), 419–421. https://doi.org/10.1093/cid/ciz1087 [read]
  2. Alberge, J.-B., Magrangeas, F., Wagner, M., Denié, S., Guérin-Charbonnel, C., Campion, L., Attal, M., Avet-Loiseau, H., Carell, T., Moreau, P., Minvielle, S., & Sérandour, A. A. (2019). DNA hydroxymethylation reveals transcription regulation networks and prognostic signatures in multiple myeloma. https://doi.org/10.1101/806133 [read]
  3. Leroy, T., Louvet, J.-M., Lalanne, C., Provost, G. L., Labadie, K., Aury, J.-M., Delzon, S., Plomion, C., & Kremer, A. (2019). Adaptive introgression as a driver of local adaptation to climate in European white oaks. New Phytologist, 226(4), 1171–1182. https://doi.org/10.1111/nph.16095 [read]
  4. Leroy, T., Rougemont, Q., Dupouey, J.-L., Bodénès, C., Lalanne, C., Belser, C., Labadie, K., Provost, G. L., Aury, J.-M., Kremer, A., & Plomion, C. (2019). Massive postglacial gene flow between European white oaks uncovered genes underlying species barriers. New Phytologist, 226(4), 1183–1197. https://doi.org/10.1111/nph.16039 [read]
  5. Guimbretiere, G., Scouarnec, S. L., Rigade, S., Boureau, A. S., Cueff, C., Capoulade, R., Dina, C., Mérot, J., Schott, J. J., & Tourneau, T. L. (2019). Phenotypic and genotypic approach of a large family with early onset tricuspid aortic valve sclerosis-stenosis: A multimodality evaluation. Archives of Cardiovascular Diseases Supplements, 11(1), 66–67. https://doi.org/10.1016/j.acvdsp.2018.10.145 [read]

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