2019

Leroy T, Rougemont Q, Dupouey JL, Bodenes C, Lalanne C, Belser C, Labadie K, Le Provost G, Aury JM, Kremer A, Plomion C
Massive postglacial gene flow between European white oaks uncovered genes underlying species barriers
New Phytologist (2019) | https://doi:10.1111/nph.16039

Strubbia S, Phan V. T. M, Schaeffer J, Koopmans M, Cotten M, Le Guyader F
Characterization of Norovirus and Other Human Enteric Viruses in Sewage and Stool Samples Through Next-Generation Sequencing
Food ans Environmental Virology August 2019 | https://doi.org/10.1007/s12560-019-09402-3

Leveque X, Hochane M, Geraldo F, Dumont S, Gratas C, Oliver L, Gaignier C, Trichet V, Layrolle P, Heymann D, Herault O, Vallette F, Olivier C
Low‐dose pesticide mixture induces accelerated mesenchymal stem cells aging in vitro
STEM CELLS 9999:00–00 | doi:10.1002/stem.3014

Thériault S, Dina C, Messika-Zeitoun D, Le Scouarnec S, Capoulade R, Gaudreault N, Rigade S, Li Z, Simonet F, Lamontagne M, Clavel MA, Arsenault B, Boureau A-S, Lecointe S, Baron E, Bonnaud S, Karakachoff M, Charpentier E, Fellah I, Roussel J-C, Verhoye JP, Baufreton C, Probst V, Roussel R, D.E.S.I.R. Study Group, Redon R, Dagenais F, Pibarot P, Mathieu P, Le Tourneau T, Bossé Y, JJ Schott
Genetic association analyses highlight IL6, ALPL, and NAV1 as three new susceptibility genes underlying calcific aortic valve stenosis
BioRxiv, January 2019 | https://doi.org/10.1101/515494

Guimbretiere G, Le Scouarnec S, Rigade S, Boureau AS, Cueff C, Capoulade R, Dina C, Mérot J, Schott JJ, Le Tourneau T
Phenotypic and genotypic approach of a large family with early onset tricuspid aortic valve sclerosis-stenosis: A multimodality evaluation
Archives of Cardiovascular Diseases Supplements, January 2019  11(1):66-67 | https://doi.org/10.1016/j.acvdsp.2018.10.145


2018

Tessoulin B, Moreau-Aubry A, Descamps G, Gomez-Bougie P, Maïga S, Gaignard A, Chiron D, Ménoret E, Le Gouill S, Moreau P, Amiot M, Pellat-Deceunynck C
Whole-exon sequencing of human myeloma cell lines shows mutations related to myeloma patients at relapse with major hits in the DNA regulation and repair pathways
J Hematol Oncol. 2018 Dec 13;11(1):137 | doi: 10.1186/s13045-018-0679-0
 
Persyn E, Redon R, Bellanger L, Dina C
The impact of a fine-scale population stratification on rare variant association test results
PLOS One 13(12): e0207677, December 2018 | doi: https://doi.org/10.1371/journal.pone.0207677

M Lenglet, F Robriquet, K Schwarz, C Camps, A Couturier, D Hoogewijs, A Buffet, S J. L. Knight, S Gad, S Couvé, F Chesnel, M Pacault, P Lindenbaum, S Job, S Dumont, T Besnard, M Cornec, H Dreau, M Pentony, E Kvikstad, S Deveaux, N Burnichon, S Ferlicot, M Vilaine, JM Mazzella, F Airaud, C Garrec, L Heidet, S Irtan, E Mantadakis, K Bouchireb, K-M Debatin, R Redon, S Bezieau, B Bressac-de Paillerets, BT Teh, F Girodon, M-L Randi, M Caterina Putti, V Bours, R Van Wijk, J R. Göthert, A Kattamis, N Janin, C Bento, J C. Taylor, Y Arlot-Bonnemains, S Richard, A-P Gimenez-Roqueplo, H Cario and B Gardie
Identification of a new VHL exon and complex splicing alterations in familial erythrocytosis or von Hippel-Lindau disease
Blood 2018 132:469-483, September 2018 | doi: https://doi.org/10.1182/blood-2018-03-838235
 
Chebouba L, Boughaci D, Guziolowski C
Proteomics Versus Clinical Data and Stochastic Local Search Based Feature Selection for Acute Myeloid Leukemia Patients' Classification
Journal of Medical Systems, 2018https://doi.org/10.1007/s10916-018-0972-z

Dumont S, Le Pennec S, Donnart A, Teusan R, Steenman M, Chevalier C, Houlgatte R and Savagner F
Transcriptional orchestration of mitochondrial homeostasis in a cellular model of PGC-1-related coactivator-dependent thyroid tumor
Oncotarget, 2018 Mar 23;9(22):15883-15894 | https://doi.org/10.18632/oncotarget.24633 

Dinka Mandakovic, Claudia Rojas, Jonathan Maldonado, Mauricio Latorre, Dante Travisany, Erwan Delage, Audrey Bihouée, Géraldine Jean, Francisca P. Díaz, Beatriz Fernández-Gómez, Pablo Cabrera, Alexis Gaete, Claudio Latorre, Rodrigo A. Gutiérrez, Alejandro Maass, Verónica Cambiazo, Sergio A. Navarrete, Damien Eveillard & Mauricio González
Structure and co-occurrence patterns in microbial communities under acute environmental stress reveal ecological factors fostering resilience
Scientific Reports volume 8, Article number: 5875 (2018) | https://doi.org/10.1038/s41598-018-23931-0

L Chebouba, B Miannay, D Boughaci, C Guziolowski
Discriminate the response of Acute Myeloid Leukemia patients to treatment by using proteomics data and Answer Set Programming
BMC Bioinformatics, March 2018 19(Suppl 2):59 | https://doi.org/10.1186/s12859-018-2034-4

Espitia O, Chatelais M, Steenman M, Charrier C, Maurel B, Georges S, Houlgatte R, Verrecchia F, Ory B, Lamoureux F, Heymann D, Gouëffic Y, Quillard T
Implication of molecular vascular smooth muscle cell heterogeneity among arterial beds in arterial calcification.
PLOS One, January 26, 2018 | https://doi.org/10.1371/journal.pone.0191976

Kilens S, Meistermann D, Moreno D, Chariau C, Gaignerie A, Reignier A, Lelièvre Y, Casanova M, Vallot C, Nedellec S, Flippe L, Firmin J, Song J, Charpentier E, Lammers J, Donnart A, Marec N, Deb W, Bihouée A, Le Caignec C, Pecqueur C, Redon R, Barrière P, Bourdon J, Pasque V, Soumillon M, Mikkelsen TS, Rougeulle C, Fréour T, David L and The Milieu Intérieur Consortium
Parallel derivation of isogenic human primed and naive induced pluripotent stem cells.
Nat Commun. 2018 Jan 24;9(1):360 | https://doi.org/10.1038/s41467-017-02107-w

S. Bézie, D. Meistermann, L. Boucault, S. Kilens, J. Zoppi, E. Autrusseau, A. Donnart, V. Nerrière-Daguin, F. Bellier-Waast, E. Charpentier, F. Duteille, L. David, I. Anegon and C. Guillonneau
Ex vivo expanded human non-cytotoxic CD8+CD45RClow/- tregs efficiently delay skin graft rejection and GVHD in humanized mice.
Front Immunol, 24 January 2018 | https://doi.org/10.3389/fimmu.2017.02014

R Danger, PJ Royer, D Reboulleau, E Durand, J Loy, A Tissot, P Lacoste, A Roux, M Reynaud-Gaubert, C Gomez, R Kessler, S Mussot, C Dromer, O Brugière, JF Mornex, R Guillemain, M Dahan, C Knoop, K Botturi, A Foureau, C Pison, A Koutsokera, L Nicod, S Brouard, A Magnan and  The COLT and SysCLAD Consortia
Blood Gene Expression Predicts Bronchiolitis Obliterans Syndrome
Front. Immunol., 11 January 2018 | https://doi.org/10.3389/fimmu.2017.01841
 
Bourcier R, Le Scouarnec S, Bonnaud S, Karakachoff M, Bourcereau E, Heurtebise-Chrétien S, Menguy C, Dina C, Simonet F, Moles A, Lenoble C, Lindenbaum P, Chatel S, Isidor B, Génin E, Deleuze JF, Schott JJ
Rare Coding Variants in ANGPTL6 Are Associated with Familial Forms of Intracranial Aneurysm
The American Journal of Human Genetics, Volume 102, Issue 1, 4 January 2018, Pages 133–141 | https://doi.org/10.1016/j.ajhg.2017.12.006
 
2017

M. Lefebvre, J. Bourdon, C. Guziolowski, A. Gaignard.
Regulatory and signaling network assembly through linked open data
Journées Ouvertes en Biologie, Informatique et Mathématiques (JOBIM2017, demo paper).

Y. Lelievre, A. Bihouée, E. Charpentier, A. Gaignard, S. Souchet and D. Vintache
Developing and sharing reproducible bioinformatics pipelines: best practices,
Journées Ouvertes en BioInformatique et Mathématiques (JOBIM2017, Poster).

A. Gaignard, K. Belhajjame, H. Skaf-Molli.
SHARP: Harmonizing cross-workflow provenance
Semantic Web solutions for large-scale biomedical data analytics (SeWebMeDA ‘17), full day workshop at ESWC2017, Portoroz, Slovenia.
https://doi.org/10.1007/978-3-319-70407-4_35

A. Gaignard, K. Belhajjame, H. Skaf-Molli.
SHARP: Harmonizing Galaxy and Taverna workflow provenance
Sematic Web solutions for large-scale biomedical data analytics (SeWebMeDA ‘17), full day workshop at ESWC2017, Portoroz, Slovenia. Demo paper

P. Lindenbaum, R. Redon
bioalcidae, samjs and vcffilterjs: object-oriented formatters and filters for bioinformatics files.
Küry S, van Woerden GM, Besnard T, Proietti Onori M, Latypova X, Towne MC, Cho MT, Prescott TE, Ploeg MA, Sanders S, Stessman HAF, Pujol A, Distel B, Robak LA, Bernstein JA, Denommé-Pichon AS, Lesca G, Sellars EA, Berg J, Carré W, Busk ØL, van Bon BWM, Waugh JL, Deardorff M, Hoganson GE, Bosanko KB, Johnson DS, Dabir T, Holla ØL, Sarkar A, Tveten K, de Bellescize J, Braathen GJ, Terhal PA, Grange DK, van Haeringen A, Lam C, Mirzaa G, Burton J, Bhoj EJ, Douglas J, Santani AB, Nesbitt AI, Helbig KL, Andrews MV, Begtrup A, Tang S, van Gassen KLI, Juusola J, Foss K, Enns GM, Moog U, Hinderhofer K, Paramasivam N, Lincoln S, Kusako BH, Lindenbaum P, Charpentier E, Nowak CB, Cherot E, Simonet T, Ruivenkamp CAL, Hahn S, Brownstein CA, Xia F, Schmitt S, Deb W, Bonneau D, Nizon M, Quinquis D, Chelly J, Rudolf G, Sanlaville D, Parent P, Gilbert-Dussardier B, Toutain A, Sutton VR, Thies J, Peart-Vissers LELM, Boisseau P, Vincent M, Grabrucker AM, Dubourg C; Undiagnosed Diseases Network, Tan WH, Verbeek NE, Granzow M, Santen GWE, Shendure J, Isidor B, Pasquier L, Redon R, Yang Y, State MW, Kleefstra T, Cogné B; GEM HUGO; Deciphering Developmental Disorders Study, Petrovski S, Retterer K, Eichler EE, Rosenfeld JA, Agrawal PB, Bézieau S, Odent S, Elgersma Y, Mercier S
De Novo Mutations in Protein Kinase Genes CAMK2A and CAMK2B Cause Intellectual Disability.
Am J Hum Genet, Nov, 2017 | https://doi.org/10.1016/j.ajhg.2017.10.003
 
Nicol B, Salou M, Vogel I, Garcia A, Dugast E, Morille J, Kilens S, Charpentier E, Donnart A, Nedellec S, Jacq-Foucher M, Le Frère F, Wiertlewski S, Bourreille A, Brouard S, Michel L, David L, Gourraud PA, Degauque N, Nicot AB, Berthelot L, Laplaud DA.
An intermediate level of CD161 expression defines a novel activated, inflammatory, and pathogenic subset of CD8+ T cells involved in multiple sclerosis.
J Autoimmun, Oct 2017 | https://doi.org/10.1016/j.jaut.2017.10.005

Oizel K, Chauvin C, Oliver L, Gratas C, Geraldo F, Jarry U, Scotet E, Rabe M, Alves-Guerra MC, Teusan R, Gautier F, Loussouarn D, Compan V, Martinou JC, Vallette F and Pecqueur C
Efficient mitochondrial glutamine targeting prevails over glioblastoma metabolic plasticity.
Clinical Cancer Research, July, 2017 | https://doi.org/10.1158/1078-0432.CCR-16-3102

Persyn E, Karakachoff M, Le Scouarnec S, Le Clézio C, Campion D, Schott J-J, Redon R, Bellanger L, Dina C
DoEstRare: A statistical test to identify local enrichments in rare genomic variants associated with disease.
PLOS, July 2017 | https://doi.org/10.1371/journal.pone.0179364
 
Penaud-Budloo M, Lecomte E, Guy-Duché A, Saleun S, Roulet A, Lopez-Roques C, Tournaire B, Cogné B, Léger A, Blouin V, Lindenbaum P, Moullier P, Ayuso E
Accurate identification and quantification of DNA species by next-generation sequencing in adeno-associated viral vectors produced in insect cells.
Human Gene Therapy Methods, May 2017 | https://doi.org/10.1016/j.omtm.2018.01.002

Kambarev S, Corvec S, Chauty A, Marion E, Marsollier L, Pecorari F
Draft Genome Sequence of Mycobacterium ulcerans S4018 Isolated from a Patient with an Active Buruli Ulcer in Benin, Africa.
Genome Announc. April 2017 vol. 5 no. 17 e00248-17 | https://doi.org/10.1128/genomeA.00248-17

Maniangou B, Legrand N, Alizadeh M, Guyet U, Willem C, David G, Charpentier E, Walencik A, Retiere C, Gagne K
KIR allele determination using Next Generation Sequencing technology.
Frontiers in Immunology, Apr 2017 | https://doi.org/10.3389/fimmu.2017.00547

Renson P, Fablet C, Le Dimna M, Mahé S, Touzain F, Blanchard Y, Paboeuf F, Rose N, Bourry O
Preparation for emergence of an Eastern European porcine reproductive and respiratory syndrome virus (PRRSV) strain in Western Europe: immunization with modified live virus vaccines or a field strain confers partial protection.
Veterinary Microbiology (2017) | https://doi.org/10.1016/j.vetmic.2017.04.021

Cohen-Boulakia S, Belhajjame K, Collin O, Chopard J, Froidevaux C, Gaignard A, Hinsen K, Larmande P, LeBras Y, Lemoine F, Mareuil F, Ménager H, Pradal C and Blanchet C
Scientific workflows for computational reproducibility in the life sciences : Status, challenges and opportunities.
Future Generation Computer Systems (2017) | http://dx.doi.org/10.1016/j.future.2017.01.012
 
Picarda E, Bézie S, Boucault L, Autrusseau E, Kilens S, Meistermann D, Martinet B, Daguin V, Donnart A, Charpentier E, David L, Anegon I and Guillonneau C
Transient antibody targeting of CD45RC induces transplant tolerance and potent antigen-specific regulatory T cells.
JCI Insight 2017 | http://dx.doi.org/10.1172/jci.insight.90088
 
2016
 
Riou R, Bressollette-Bodin C, Boutoille D, Katia Gagne, Rodallec A, Lefebvre M, Raffi F, Senitzer D, Imbert-Marcille B-M and Retière C
Severe symptomatic primary HCMV infection despite effective innate and adaptive immune responses.
J. Virol. JVI.02245-16; Accepted manuscript Dec 2016
 
Leroy T, Roux C, Villate L, Bodénès C, Romiguier J, Paiva J, Dossat C, Aury J-M, Plomion C and Antoine Kremer
Extensive recent secondary contacts between four European white oak species.
New Phytologist 2017 Accepted 21 Nov 2016

Vincent Portero, Solena Le Scouarnec, Zeineb EsSalahLamoureux, Sophie Burel, JeanBaptiste Gourraud, Stéphanie Bonnaud, Pierre Lindenbaum, Floriane Simonet, Jade Violleau, Estelle Baron, Eléonore Moreau, Carol Scott, Stéphanie Chatel, Gildas Loussouarn, Thomas O'Hara, Philippe Mabo, Christian Dina, Hervé Le Marec, JeanJacques Schott, Vincent Probst, Isabelle Baró, Céline Marionneau, Flavien Charpentier, Richard Redon
Dysfunction of the VoltageGated K+ Channel 2 Subunit in a Familial Case of Brugada Syndrome.
Journal of the American Heart Association. 2016;5:e003122

Sanchez-Castro M, Eldjouzi H, Charpentier E, Busson PF, Hauet Q, Lindenbaum P, Delasalle-Guyomarch B, Baudry A, Pichon O, Pascal C, Lefort B, Bajolle F, Pezard P, Schott JJ, Dina C, Redon R, Gournay V, Bonnet D, Le Caignec C.
Search for Rare Copy-Number Variants in Congenital Heart Defects Identifies Novel Candidate Genes and a Potential Role for FOXC1 in Patients With Coarctation of the Aorta.
Circ Cardiovasc Genet. 2016 Feb
 
Rimbert A, Pichelin M, Lecointe S, Marrec M, Le Scouarnec S, Barrak E, Croyal M, Krempf M, Le Marec H, Redon R, Schott JJ, Magré J, Cariou B.
Identification of novel APOB mutations by targeted next-generation sequencing for the molecular diagnosis of familial hypobetalipoproteinemia.
Atherosclerosis, 2016
 
Isidor B, Küry S, Rosenfeld JA, Besnard T, Schmitt S, Joss S, Davies SJ, Lebel RR, Henderson A, Schaaf CP, Streff HE, Yang Y, Jain V, Chida N, Latypova X, Caignec CL, Cogné B, Mercier S, Vincent M, Colin E, Bonneau D, Denommé AS, Parent P, Gilbert-Dussardier B, Odent S, Toutain A, Piton A, Dina C, Donnart A, Lindenbaum P, Charpentier E, Redon R, Iemura K, Ikeda M, Tanaka K, Bézieau S.
De Novo Truncating Mutations in the kinetochore-microtubules attachment gene CHAMP1 Cause Syndromic Intellectual Disability.
Hum Mutat. 2016 Jan 11

Daumy X, Amarouch MY, Lindenbaum P, Bonnaud S, Charpentier E, Bianchi B, Nafzger S, Baron E, Fouchard S, Thollet A, Kyndt F, Barc J, Le Scouarnec S, Makita N, Le Marec H, Dina C, Gourraud JB, Probst V, Abriel H, Redon R, Schott JJ
Targeted resequencing identifies TRPM4 as a major gene predisposing to progressive familial heart block type I.
International Journal of Cardiology (2016)
2015
 
Lecomte E, Tournaire B, Cogné B, Dupont JB, Lindenbaum P, Martin-Fontaine M, Broucque F, Robin C, Hebben M, Merten OW, Blouin V, François A, Redon R, Moullier P, Léger A.
Advanced Characterization of DNA Molecules in rAAV Vector Preparations by Single-stranded Virus Next-generation Sequencing.
Mol Ther Nucleic Acids. 2015 Oct 27

Karakachoff M, Duforet-Frebourg N, Simonet F, Le Scouarnec S, Pellen N, Lecointe S, Charpentier E, Gros F, Cauchi S, Froguel P, Copin N; D.E.S.I.R. Study Group, Le Tourneau T, Probst V, Le Marec H, Molinaro S, Balkau B, Redon R, Schott JJ, Blum MG, Dina C; D E S I R Study Group.
Fine-scale human genetic structure in Western France.
Eur J Hum Genet. 2015 Jun
 
Le Scouarnec S, Karakachoff M, Gourraud JB, Lindenbaum P, Bonnaud S, Portero V, Duboscq-Bidot L, Daumy X, Simonet F, Teusan R, Baron E, Violleau J, Persyn E, Bellanger L, Barc J, Chatel S, Martins R, Mabo P, Sacher F, Haïssaguerre M, Kyndt F, Schmitt S, Bézieau S, Le Marec H, Dina C, Schott JJ, Probst V, Redon R.
Testing the burden of rare variation in arrhythmia-susceptibility genes provides new insights into molecular diagnosis for Brugada syndrome.
Hum Mol Genet. 2015 May 15;24(10):2757-63.
2014
 
Béziau DM, Barc J, O'Hara T, Le Gloan L, Amarouch MY, Solnon A, Pavin D, Lecointe S, Bouillet P, Gourraud JB, Guicheney P, Denjoy I, Redon R, Mabo P, le Marec H, Loussouarn G, Kyndt F, Schott JJ, Probst V, Baró I.
Complex Brugada syndrome inheritance in a family harbouring compound SCN5A and CACNA1C mutations.
Basic Res Cardiol. 2014 Nov
 
Chesné J, Danger R, Botturi K, Reynaud-Gaubert M, Mussot S, Stern M, Danner-Boucher I, Mornex JF, Pison C, Dromer C, Kessler R, Dahan M, Brugière O, Le Pavec J, Perros F, Humbert M, Gomez C, Brouard S, Magnan A; COLT Consortium.
Systematic analysis of blood cell transcriptome in end-stage chronic respiratory diseases.
PLoS One. 2014 Oct 20
 
Lindenbaum P. and Redon R.
mod_bio: Apache modules for Next-Generation sequencing data.
Bioinformatics. 2014 Sept 4
 
Shy D, Gillet L, Ogrodnik J, Albesa M, Verkerk AO, Wolswinkel R, Rougier JS, Barc J, Essers MC, Syam N, Marsman RF, van Mil AM, Rotman S, Redon R, Bezzina CR, Remme CA, Abriel H.
PDZ domain-binding motif regulates cardiomyocyte compartment-specific NaV1.5 channel expression and function.
Circulation. 2014 Jul 8
 
Cogné B, Snyder R, Lindenbaum P, Dupont JB, Redon R, Moullier P, Leger A.
NGS library preparation may generate artifactual integration sites of AAV vectors.
Nat Med. 2014 Jun

2013
 
Mercier S, Küry S, Shaboodien G, Houniet DT, Khumalo NP, Bou-Hanna C, Bodak N, Cormier-Daire V, David A, Faivre L, Figarella-Branger D, Gherardi RK, Glen E, Hamel A, Laboisse C, Le Caignec C, Lindenbaum P, Magot A, Munnich A, Mussini JM, Pillay K, Rahman T, Redon R, Salort-Campana E, Santibanez-Koref M, Thauvin C, Barbarot S, Keavney B, Bézieau S, Mayosi BM.
Mutations in FAM111B Cause Hereditary Fibrosing Poikiloderma with Tendon Contracture, Myopathy, and Pulmonary Fibrosis.
Am J Hum Genet. 2013 Dec 5

Bezzina CR, Barc J, Mizusawa Y, Remme CA, Gourraud JB, Simonet F, Verkerk AO, Schwartz PJ, Crotti L, Dagradi F, Guicheney P, Fressart V, Leenhardt A, Antzelevitch C, Bartkowiak S, Schulze-Bahr E, Zumhagen S, Behr ER, Bastiaenen R, Tfelt-Hansen J, Olesen MS, Kääb S, Beckmann BM, Weeke P, Watanabe H, Endo N, Minamino T, Horie M, Ohno S, Hasegawa K, Makita N, Nogami A, Shimizu W, Aiba T, Froguel P, Balkau B, Lantieri O, Torchio M, Wiese C, Weber D, Wolswinkel R, Coronel R, Boukens BJ, Bézieau S, Charpentier E, Chatel S, Despres A, Gros F, Kyndt F, Lecointe S, Lindenbaum P, Portero V, Violleau J, Gessler M, Tan HL, Roden DM, Christoffels VM, Le Marec H, Wilde AA, Probst V, Schott JJ, Dina C, Redon R.
Common variants at SCN5A-SCN10A and HEY2 are associated with Brugada syndrome, a rare disease with high risk of sudden cardiac death
Nat Genet. 2013 Aug 28;45(9):1044-9. 
 
Colman H, Le Berre-Scoul C, Hernandez C, Pierredon S, Bihouée A, Houlgatte R, Vagner S, Rosenberg AR, Féray C.
Genome-wide analysis of host mRNA translation during hepatitis C virus infection.
J Virol. 2013 Apr 3.

2012
 
Feuerstein P, Puard V, Chevalier C, Teusan R, Cadoret V, Guerif F, Houlgatte R, Royere D.

Genomic assessment of human cumulus cell marker genes as predictors of oocyte developmental competence : impact of various experimental factors.
PLoS One. 2012

Cuccuini W, Briere J, Mounier N, Voelker HU, Rosenwald A, Sundstrom C, Cogliatti S, Hirchaud E, Ysebaert L, Bron D, Soulier J, Gaulard P, Houlgatte R, Gisselbrecht C, Thieblemont C.
MYC+ diffuse large B-cell lymphoma is not salvaged by classical R-ICE or R-DHAP followed by BEAM plus autologous stem cell transplantation.
Blood. 2012 May 17


2011
 
Thieblemont C, Briere J, Mounier N, Voelker HU, Cuccuini W, Hirchaud E, Rosenwald A, Jack A, Sundstrom C, Cogliatti S, Trougouboff P, Boudova L, Ysebaert L, Soulier J, Chevalier C, Bron D, Schmitz N, Gaulard P, Houlgatte R, Gisselbrecht C.
The germinal center/activated B-cell subclassification has a prognostic impact for response to salvage therapy in relapsed/refractory diffuse large B-cell lymphoma : a bio-CORAL study.
J Clin Oncol. 2011 Nov 1

Quillé ML, Carat S, Quéméner-Redon S, Hirchaud E, Baron D, Benech C, Guihot J, Placet M, Mignen O, Férec C, Houlgatte R, Friocourt G.
High-throughput analysis of promoter occupancy reveals new targets for Arx, a gene mutated in mental retardation and interneuronopathies.
PLoS One. 2011 ;6(9):e25181

Baron D, Dubois E, Bihouée A, Teusan R, Steenman M, Jourdon P, Magot A, Péréon Y, Veitia R, Savagner F, Ramstein G, Houlgatte R.
Meta-analysis of muscle transcriptome data using the MADMuscle database reveals biologically relevant gene patterns.
BMC Genomics. 2011 Feb 16
 
Baron D, Bihouée A, Teusan R, Dubois E, Savagner F, Steenman M, Houlgatte R, Ramstein G.
MADGene : retrieval and processing of gene identifier lists for the analysis of heterogeneous microarray datasets.
Bioinformatics. 2011 Mar 1


2010

Orozco-Solís R, Matos RJ, Guzmán-Quevedo O, Lopes de Souza S, Bihouée A, Houlgatte R, Manhães de Castro R, Bolaños-Jiménez F.
Nutritional programming in the rat is linked to long-lasting changes in nutrient sensing and energy homeostasis in the hypothalamus.
PLoS One. 2010 Oct 21

Carat S, Houlgatte R, Bourdon J.
A parallel scheme for comparing transcription factor binding sites matrices.
J Bioinform Comput Biol. 2010 Jun

Lamirault G, Meur NL, Roussel JC, Cunff MF, Baron D, Bihouée A, Guisle I, Raharijaona M, Ramstein G, Teusan R, Chevalier C, Gueffet JP, Trochu JN, Léger JJ, Houlgatte R, Steenman M.
Molecular risk stratification in advanced heart failure patients.
J Cell Mol Med. 2010 Jun